resemble: Regression and Similarity Evaluation for Memory-Based Learning in Spectral Chemometrics

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Implementation of functions for spectral similarity/dissimilarity analysis and memory-based learning (MBL) for non-linear modeling in complex spectral datasets. In chemometrics MBL is also known as local modeling.

Author
Leonardo Ramirez-Lopez [aut, cre], Antoine Stevens [aut]
Date of publication
2016-03-04 00:11:00
Maintainer
Leonardo Ramirez-Lopez <ramirez.lopez.leo@gmail.com>
License
GPL (>= 3)
Version
1.2.2
URLs

View on CRAN

Man pages

cms
Function for computing the mean of each column in a 'matrix'
colSds
Function for computing the standard deviation of each column...
corDiss
Correlation and moving correlation dissimilarity measurements...
cSds
Standard deviation of columns
e2m
A function for transforming a matrix from its Euclidean spcae...
fastDist
A fast distance algorithm for two matrices written in C++
fastDistVV
A fast (parallel for linux) algorithm of (squared) Euclidean...
fastDistVVL
A fast (serial) algorithm of (squared) Euclidean...
fDiss
Euclidean, Mahalanobis and cosine dissimilarity measurements
fopls
fast orthogonal scores algorithn of partial leat squares...
getPredictions
Extract predictions from an object of class 'mbl'
gprCv
Cross validation for Gaussian process regression
gprdp
Gaussian process regression with linear kernel (gprdp)
gpr.dp
Gaussian process regression with dot product covariance
isubset
iterator that re-organize and subset a matrix based on...
locFitnpred
Local multivariate regression
mbl
A function for memory-based learning (mbl)
mblControl
A function that controls some aspects of the memory-based...
minDissV
A function to compute indices of minimum values of a distance...
movcorDist
Moving/rolling correlation distance of two matrices
neigCleaning
A function for identifying samples that do not belong to any...
opls
orthogonal scores algorithn of partial leat squares (opls)
orthoDiss
A function for computing dissimilarity matrices from...
orthoProjection
Orthogonal projections using partial least squares and...
pgpcv_cpp
Internal Cpp function for performing leave-group-out cross...
plot.mbl
Plot method for an object of class 'mbl'
plot.orthoProjection
Plot method for an object of class 'orthoProjection'
plsCv
Cross validation for PLS regression
pplscv_cpp
Internal Cpp function for performing leave-group-out cross...
predgprdp
Prediction function for the 'gprdp' function (Gaussian...
pred.gpr.dp
Prediction function for "gpr.dp" (Gaussian process regression...
predopls
Prediction function for the 'opls' and 'opls2' functions
print.localOrthoDiss
Print method for an object of class 'orthoDiss'
print.mbl
Print method for an object of class 'mbl'
print.orthoProjection
Print method for an object of class 'orthoProjection'
projectpls
Projection function for the 'opls' function
resemble-package
Overview of the functions in the resemble package
sid
A function for computing the spectral information divergence...
simEval
A function for evaluating similarity/dissimilarity matrices...
smpl
A simple ramdom sampling function
sqrtSm
Square root of (square) symetric matrices
waplswCpp
Internal Cpp function for computing the weights of the PLS...
wapls.weights
Internal function for computing the weights of the PLS...
wcolSds
Function for identifiying the column in a 'matrix' with the...
which_min
A function to compute row-wise index of minimum values of a...
which_minV
A function to compute indices of minimum values of a distance...

Files in this package

resemble
resemble/inst
resemble/inst/CITATION
resemble/src
resemble/src/Makevars
resemble/src/regalg.cpp
resemble/src/movcorDist.cpp
resemble/src/RcppExports.cpp
resemble/src/which_min.cpp
resemble/src/fastDist.cpp
resemble/NAMESPACE
resemble/NEWS
resemble/R
resemble/R/plot.orthoProjection.R
resemble/R/orthoProjection.R
resemble/R/print.orthoProjection.R
resemble/R/sid.R
resemble/R/print.localOrthoDiss.R
resemble/R/getPredictions.R
resemble/R/orthoDiss.R
resemble/R/mbl.R
resemble/R/print.mbl.R
resemble/R/corDiss.R
resemble/R/resemble.R
resemble/R/plot.mbl.R
resemble/R/fDiss.R
resemble/R/RcppExports.R
resemble/R/mblControl.R
resemble/R/simEval.R
resemble/R/neigCleaning.R
resemble/R/AAA.R
resemble/README.md
resemble/MD5
resemble/DESCRIPTION
resemble/man
resemble/man/mblControl.Rd
resemble/man/gprdp.Rd
resemble/man/pgpcv_cpp.Rd
resemble/man/orthoProjection.Rd
resemble/man/predgprdp.Rd
resemble/man/waplswCpp.Rd
resemble/man/fastDist.Rd
resemble/man/locFitnpred.Rd
resemble/man/sid.Rd
resemble/man/colSds.Rd
resemble/man/cSds.Rd
resemble/man/e2m.Rd
resemble/man/getPredictions.Rd
resemble/man/fopls.Rd
resemble/man/movcorDist.Rd
resemble/man/isubset.Rd
resemble/man/minDissV.Rd
resemble/man/which_min.Rd
resemble/man/pplscv_cpp.Rd
resemble/man/cms.Rd
resemble/man/print.localOrthoDiss.Rd
resemble/man/resemble-package.Rd
resemble/man/gpr.dp.Rd
resemble/man/wapls.weights.Rd
resemble/man/opls.Rd
resemble/man/fastDistVVL.Rd
resemble/man/mbl.Rd
resemble/man/plot.mbl.Rd
resemble/man/fDiss.Rd
resemble/man/projectpls.Rd
resemble/man/fastDistVV.Rd
resemble/man/corDiss.Rd
resemble/man/smpl.Rd
resemble/man/neigCleaning.Rd
resemble/man/gprCv.Rd
resemble/man/print.orthoProjection.Rd
resemble/man/wcolSds.Rd
resemble/man/which_minV.Rd
resemble/man/predopls.Rd
resemble/man/print.mbl.Rd
resemble/man/plot.orthoProjection.Rd
resemble/man/plsCv.Rd
resemble/man/sqrtSm.Rd
resemble/man/simEval.Rd
resemble/man/pred.gpr.dp.Rd
resemble/man/orthoDiss.Rd