rfishbase: R Interface to 'FishBase'

A programmatic interface to http://www.fishbase.org, re-written based on an accompanying 'RESTful' API. Access tables describing over 30,000 species of fish, their biology, ecology, morphology, and more. This package also supports experimental access to http://www.sealifebase.org data, which contains nearly 200,000 species records for all types of aquatic life not covered by 'FishBase.'

Author
Carl Boettiger [cre, aut], Scott Chamberlain [aut], Duncan Temple Lang [aut], Peter Wainwright [aut]
Date of publication
2016-07-22 01:20:21
Maintainer
Carl Boettiger <cboettig@ropensci.org>
License
CC0
Version
2.1.1
URLs

View on CRAN

Man pages

c_code
c_code
common_names
commonnames
common_to_sci
common_to_sci
country
country
countrysub
countrysub
countrysubref
countrysubref
diet
diet
distribution
distribution
docs
docs
ecology
ecology
ecosystem
ecosystem
faoareas
faoareas
fecundity
fecundity
fishbase
A table of all the the species found in FishBase, including...
fooditems
fooditems
heartbeat
heartbeat
introductions
introductions
length_freq
length_freq
length_length
length_length
length_weight
length_weight
list_fields
list_fields
load_taxa
load_taxa
maturity
maturity
morphology
morphology
morphometrics
morphometrics
occurrence
occurrence
oxygen
oxygen
ping
ping
popchar
popchar
popgrowth
popgrowth
popqb
popqb
predators
predators
ration
ration
reproduction
reproduction
rfishbase-package
The new R interface to Fishbase, v2.0
sci_to_common
sci_to_common
sealifebase
A table of all the the species found in SeaLifeBase,...
spawning
spawning
species
species
species_fields
A list of the species_fields available
species_list
species_list
species_names
speciesnames
speed
speed
stocks
stocks
swimming
swimming
synonyms
synonyms
validate_names
validate_names

Files in this package

rfishbase
rfishbase/inst
rfishbase/inst/metadata
rfishbase/inst/metadata/species.csv
rfishbase/inst/examples
rfishbase/inst/examples/length-weight.Rmd
rfishbase/inst/CITATION
rfishbase/inst/doc
rfishbase/inst/doc/tutorial.R
rfishbase/inst/doc/tutorial.html
rfishbase/inst/doc/tutorial.Rmd
rfishbase/tests
rfishbase/tests/testthat.R
rfishbase/tests/testthat
rfishbase/tests/testthat/test_commonnames.R
rfishbase/tests/testthat/test_species_list.R
rfishbase/tests/testthat/test_endpoint.R
rfishbase/tests/testthat/test_check_and_parse.R
rfishbase/tests/testthat/test_heartbeat.R
rfishbase/tests/testthat/test_species.R
rfishbase/tests/testthat/test_docs.R
rfishbase/tests/testthat/test_parse_name.R
rfishbase/tests/testthat/test_load_taxa.R
rfishbase/tests/testthat/test_morpho_physio.R
rfishbase/tests/testthat/test_population_dynamics.R
rfishbase/tests/testthat/test_distribution.R
rfishbase/tests/testthat/test_synonyms.R
rfishbase/tests/testthat/helper_rfishbase.R
rfishbase/tests/testthat/test_maturity.R
rfishbase/tests/testthat/test_list_fields.R
rfishbase/tests/testthat/test_ecology.R
rfishbase/NAMESPACE
rfishbase/NEWS
rfishbase/data
rfishbase/data/fields.R
rfishbase/data/datalist
rfishbase/data/sealifebase.rda
rfishbase/data/fishbase.rda
rfishbase/R
rfishbase/R/morpho_physio.R
rfishbase/R/docs.R
rfishbase/R/synonyms.R
rfishbase/R/heartbeat.R
rfishbase/R/load_taxa.R
rfishbase/R/fishbase.R
rfishbase/R/common_names.R
rfishbase/R/00-endpoint.R
rfishbase/R/population_dynamics.R
rfishbase/R/list_fields.R
rfishbase/R/reproduction.R
rfishbase/R/species_names.R
rfishbase/R/distribution.R
rfishbase/R/check_and_parse.R
rfishbase/R/species_list.R
rfishbase/R/trophic_ecology.R
rfishbase/R/species.R
rfishbase/vignettes
rfishbase/vignettes/tutorial.Rmd
rfishbase/README.md
rfishbase/MD5
rfishbase/build
rfishbase/build/vignette.rds
rfishbase/DESCRIPTION
rfishbase/man
rfishbase/man/countrysub.Rd
rfishbase/man/reproduction.Rd
rfishbase/man/common_to_sci.Rd
rfishbase/man/species_fields.Rd
rfishbase/man/length_weight.Rd
rfishbase/man/fecundity.Rd
rfishbase/man/heartbeat.Rd
rfishbase/man/ecology.Rd
rfishbase/man/fishbase.Rd
rfishbase/man/occurrence.Rd
rfishbase/man/length_length.Rd
rfishbase/man/faoareas.Rd
rfishbase/man/countrysubref.Rd
rfishbase/man/species_names.Rd
rfishbase/man/maturity.Rd
rfishbase/man/ration.Rd
rfishbase/man/swimming.Rd
rfishbase/man/diet.Rd
rfishbase/man/morphometrics.Rd
rfishbase/man/popchar.Rd
rfishbase/man/ecosystem.Rd
rfishbase/man/stocks.Rd
rfishbase/man/morphology.Rd
rfishbase/man/speed.Rd
rfishbase/man/synonyms.Rd
rfishbase/man/country.Rd
rfishbase/man/length_freq.Rd
rfishbase/man/validate_names.Rd
rfishbase/man/c_code.Rd
rfishbase/man/rfishbase-package.Rd
rfishbase/man/popqb.Rd
rfishbase/man/predators.Rd
rfishbase/man/sealifebase.Rd
rfishbase/man/fooditems.Rd
rfishbase/man/distribution.Rd
rfishbase/man/introductions.Rd
rfishbase/man/list_fields.Rd
rfishbase/man/species_list.Rd
rfishbase/man/species.Rd
rfishbase/man/load_taxa.Rd
rfishbase/man/sci_to_common.Rd
rfishbase/man/spawning.Rd
rfishbase/man/docs.Rd
rfishbase/man/oxygen.Rd
rfishbase/man/popgrowth.Rd
rfishbase/man/ping.Rd
rfishbase/man/common_names.Rd