rioja: Analysis of Quaternary Science Data

Functions for the analysis of Quaternary science data, including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer functions, and stratigraphic diagrams.

AuthorSteve Juggins
Date of publication2016-07-13 14:52:28
MaintainerSteve Juggins <Stephen.Juggins@ncl.ac.uk>
LicenseGPL (>= 2)
Version0.9-9
http://www.staff.ncl.ac.uk/stephen.juggins/

View on CRAN

Man pages

aber: Abernethy Forest pollen data

chclust: Constrained hierarchical clustering

compare.datasets: Compare datasets for matching variables (species)

gutils: Graphic utilities.

IK: Imbrie and Kipp foraminifera data

IKFA: Imbrie & Kipp Factor Analysis

inkspot: Two-way ordered bubble plot of a species by sites data table

interp.dataset: Interpolate a dataset

LWR: Weighted averaging (LWR) regression and calibration

MAT: Palaeoenvironmental reconstruction using the Modern Analogue...

Merge: Merges two or more data frames on the basis of common column...

MLRC: Palaeoenvironmental reconstruction using Maximum Likelihood...

MR: Multiple regression

Ponds: Southeast England ponds and pools diatom and water chemistry...

PTF: Palaeoecological transfer functions

randomPTF: Random transfer functions to calculate variable importance

read.C2Model: Imports results from a C2 model into R

read.CEP: Reads and writes data in Cornell Ecology Program (CEP) format

read.Tilia: Read data in Tilia format

rioja-internal: Internal rioja functions.

rioja.package: Analysis of Quaternary Science Data

RLGH: Diatom stratigraphic data from the Round Loch of Glenhead,...

sp.plot: Plots species distributions along an environmental gradient

strat.plot: Plot a stratigraphic diagram

strat.plot.simple: Plot a simple stratigraphic diagram

SWAP: SWAP surface sediment diatom data and lake-water pH.

utils: Utility functions.

WA: Weighted averaging (WA) regression and calibration

WAPLS: Weighted averaging partial least squares (WAPLS) regression...

Files in this package

rioja
rioja/inst
rioja/inst/COPYING
rioja/inst/CITATION
rioja/inst/ChangeLog
rioja/inst/example.datasets
rioja/inst/example.datasets/WOLSFELD.TIL
rioja/inst/example.datasets/RLGHLongCore.cep
rioja/inst/example.datasets/C2_IK_Model.xls
rioja/src
rioja/src/dmatinv.cpp
rioja/src/fmt.h
rioja/src/wrtfmt.c
rioja/src/util.c
rioja/src/sysdep1.h
rioja/src/fio.h
rioja/src/cornellout.cpp
rioja/src/tilia.cpp
rioja/src/mlrc.cpp
rioja/src/mlrc.h
rioja/src/rsfe.c
rioja/src/sfe.c
rioja/src/nutil.h
rioja/src/rdfmt.c
rioja/src/dolio.c
rioja/src/nutil.cpp
rioja/src/newcinfuncs.c
rioja/src/mat.cpp
rioja/src/fmtlib.c
rioja/src/rawio.h
rioja/src/utils2.c
rioja/src/analog.c
rioja/src/wa.cpp
rioja/src/endfile.c
rioja/src/f2c.h
rioja/src/wapls.cpp
rioja/src/lread.c
rioja/src/open.c
rioja/src/tilfuncs.h
rioja/src/close.c
rioja/src/lio.h
rioja/src/err.c
rioja/src/s_copy.c
rioja/src/fmt.c
rioja/src/mat.h
rioja/src/chclust.cpp
rioja/src/fp.h
rioja/src/sig_die.c
rioja/src/wref.c
rioja/src/cornellin.cpp
rioja/src/tiliafuncs.cpp
rioja/src/lwrite.c
rioja/src/newcin2.cpp
rioja/NAMESPACE
rioja/data
rioja/data/IK.rda
rioja/data/aber.rda
rioja/data/SWAP.rda
rioja/data/RLGH.rda
rioja/data/Ponds.rda
rioja/R
rioja/R/bstick.r
rioja/R/inkspot.r
rioja/R/MR.r
rioja/R/LWR.r
rioja/R/consclust.r
rioja/R/MLRC.r
rioja/R/internals.r
rioja/R/gutils.r
rioja/R/utils.r
rioja/R/WAPLS.r
rioja/R/merge.r
rioja/R/WA.r
rioja/R/compare.datasets.r
rioja/R/zzz.r
rioja/R/interp.datasets.r
rioja/R/PTF.r
rioja/R/sp.plot.r
rioja/R/randomPTF.R
rioja/R/readC2Model.r
rioja/R/strat.plot.r
rioja/R/MAT.r
rioja/R/MLRC2.R
rioja/R/cep.r
rioja/R/IKFA.r
rioja/MD5
rioja/DESCRIPTION
rioja/man
rioja/man/read.C2Model.Rd rioja/man/strat.plot.Rd rioja/man/gutils.Rd rioja/man/WAPLS.Rd rioja/man/chclust.Rd rioja/man/compare.datasets.Rd rioja/man/utils.Rd rioja/man/read.Tilia.Rd rioja/man/strat.plot.simple.Rd rioja/man/randomPTF.Rd rioja/man/LWR.Rd rioja/man/RLGH.Rd rioja/man/sp.plot.Rd rioja/man/WA.Rd rioja/man/interp.dataset.Rd rioja/man/MR.Rd rioja/man/Merge.Rd rioja/man/read.CEP.Rd rioja/man/IKFA.Rd rioja/man/IK.Rd rioja/man/MLRC.Rd rioja/man/MAT.Rd rioja/man/aber.Rd rioja/man/Ponds.Rd rioja/man/PTF.Rd rioja/man/SWAP.Rd rioja/man/inkspot.Rd rioja/man/rioja-internal.Rd rioja/man/rioja.package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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