rioja: Analysis of Quaternary Science Data

Functions for the analysis of Quaternary science data, including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer functions, and stratigraphic diagrams.

AuthorSteve Juggins
Date of publication2016-07-13 14:52:28
MaintainerSteve Juggins <Stephen.Juggins@ncl.ac.uk>
LicenseGPL (>= 2)
Version0.9-9
http://www.staff.ncl.ac.uk/stephen.juggins/

View on CRAN

Man pages

aber: Abernethy Forest pollen data

chclust: Constrained hierarchical clustering

compare.datasets: Compare datasets for matching variables (species)

gutils: Graphic utilities.

IK: Imbrie and Kipp foraminifera data

IKFA: Imbrie & Kipp Factor Analysis

inkspot: Two-way ordered bubble plot of a species by sites data table

interp.dataset: Interpolate a dataset

LWR: Weighted averaging (LWR) regression and calibration

MAT: Palaeoenvironmental reconstruction using the Modern Analogue...

Merge: Merges two or more data frames on the basis of common column...

MLRC: Palaeoenvironmental reconstruction using Maximum Likelihood...

MR: Multiple regression

Ponds: Southeast England ponds and pools diatom and water chemistry...

PTF: Palaeoecological transfer functions

randomPTF: Random transfer functions to calculate variable importance

read.C2Model: Imports results from a C2 model into R

read.CEP: Reads and writes data in Cornell Ecology Program (CEP) format

read.Tilia: Read data in Tilia format

rioja-internal: Internal rioja functions.

rioja.package: Analysis of Quaternary Science Data

RLGH: Diatom stratigraphic data from the Round Loch of Glenhead,...

sp.plot: Plots species distributions along an environmental gradient

strat.plot: Plot a stratigraphic diagram

strat.plot.simple: Plot a simple stratigraphic diagram

SWAP: SWAP surface sediment diatom data and lake-water pH.

utils: Utility functions.

WA: Weighted averaging (WA) regression and calibration

WAPLS: Weighted averaging partial least squares (WAPLS) regression...

Functions

aber Man page
addClustZone Man page
addZone Man page
bstick Man page
bstick.chclust Man page
chclust Man page
.check.data Man page
coef.IKFA Man page
coef.LWR Man page
coef.MLRC Man page
coef.MR Man page
coef.WA Man page
coef.WAPLS Man page
communality Man page
compare.datasets Man page
crossval Man page
.crossval Man page
crossval.default Man page
crossval.IKFA Man page
crossval.LWR Man page
crossval.MAT Man page
crossval.MLRC Man page
crossval.MR Man page
crossval.WA Man page
crossval.WAPLS Man page
dot Man page
dot.data.frame Man page
dot.default Man page
dummy2factor Man page
figCnvt Man page
fitted.IKFA Man page
fitted.LWR Man page
fitted.MAT Man page
fitted.MLRC Man page
fitted.MR Man page
fitted.WA Man page
fitted.WAPLS Man page
.get.rand Man page
Hill.N2 Man page
hulls Man page
IK Man page
IKFA Man page
IKFA.fit Man page
inkspot Man page
interp.dataset Man page
LWR Man page
LWR.fit Man page
make.dummy Man page
MAT Man page
.max.bias Man page
Merge Man page
MLRC Man page
MLRC.fit Man page
MR Man page
MR.fit Man page
paldist Man page
paldist2 Man page
performance Man page
.performance Man page
performance.default Man page
performance.IKFA Man page
performance.LWR Man page
performance.MAT Man page
performance.MLRC Man page
performance.MR Man page
performance.WA Man page
performance.WAPLS Man page
plot.chclust Man page
plot.compare.datasets Man page
plot.IKFA Man page
plot.LWR Man page
plot.MAT Man page
plot.MLRC Man page
plot.MR Man page
plot.randomPTF Man page
plot.WA Man page
plot.WAPLS Man page
Ponds Man page
.predict Man page
predict.IKFA Man page
predict.internal.IKFA Man page
predict.internal.LWR Man page
predict.internal.MLRC Man page
predict.internal.MR Man page
predict.internal.WA Man page
predict.internal.WAPLS Man page
predict.LWR Man page
predict.MAT Man page
predict.MLRC Man page
predict.MR Man page
predict.WA Man page
predict.WAPLS Man page
print.C2 Man page
.print.crossval Man page
print.IKFA Man page
print.LWR Man page
print.MAT Man page
print.MLRC Man page
print.MR Man page
.print.performance Man page
print.randomPTF Man page
print.WA Man page
print.WAPLS Man page
.r2 Man page
randomPTF Man page
rand.t.test Man page
rand.t.test.default Man page
rand.t.test.IKFA Man page
rand.t.test.WA Man page
rand.t.test.WAPLS Man page
read.C2Model Man page
read.CEP Man page
read.Tilia Man page
residuals.IKFA Man page
residuals.LWR Man page
residuals.MAT Man page
residuals.MLRC Man page
residuals.MR Man page
residuals.WA Man page
residuals.WAPLS Man page
rioja Man page
rioja-package Man page
RLGH Man page
.RMSE Man page
screeplot.IKFA Man page
screeplot.MAT Man page
screeplot.WAPLS Man page
.set.rand.seed Man page
site.summ Man page
sp.plot Man page
sp.plot.default Man page
sp.plot.formula Man page
sp.summ Man page
strat.plot Man page
strat.plot.simple Man page
summary.C2 Man page
summary.IKFA Man page
summary.LWR Man page
summary.MAT Man page
summary.MLRC Man page
summary.MR Man page
summary.WA Man page
summary.WAPLS Man page
SWAP Man page
WA Man page
WA.fit Man page
WAPLS Man page
WAPLS.fit Man page
write.CEP Man page
write.list.Excel Man page

Files

rioja
rioja/inst
rioja/inst/COPYING
rioja/inst/CITATION
rioja/inst/ChangeLog
rioja/inst/example.datasets
rioja/inst/example.datasets/WOLSFELD.TIL
rioja/inst/example.datasets/RLGHLongCore.cep
rioja/inst/example.datasets/C2_IK_Model.xls
rioja/src
rioja/src/dmatinv.cpp
rioja/src/fmt.h
rioja/src/wrtfmt.c
rioja/src/util.c
rioja/src/sysdep1.h
rioja/src/fio.h
rioja/src/cornellout.cpp
rioja/src/tilia.cpp
rioja/src/mlrc.cpp
rioja/src/mlrc.h
rioja/src/rsfe.c
rioja/src/sfe.c
rioja/src/nutil.h
rioja/src/rdfmt.c
rioja/src/dolio.c
rioja/src/nutil.cpp
rioja/src/newcinfuncs.c
rioja/src/mat.cpp
rioja/src/fmtlib.c
rioja/src/rawio.h
rioja/src/utils2.c
rioja/src/analog.c
rioja/src/wa.cpp
rioja/src/endfile.c
rioja/src/f2c.h
rioja/src/wapls.cpp
rioja/src/lread.c
rioja/src/open.c
rioja/src/tilfuncs.h
rioja/src/close.c
rioja/src/lio.h
rioja/src/err.c
rioja/src/s_copy.c
rioja/src/fmt.c
rioja/src/mat.h
rioja/src/chclust.cpp
rioja/src/fp.h
rioja/src/sig_die.c
rioja/src/wref.c
rioja/src/cornellin.cpp
rioja/src/tiliafuncs.cpp
rioja/src/lwrite.c
rioja/src/newcin2.cpp
rioja/NAMESPACE
rioja/data
rioja/data/IK.rda
rioja/data/aber.rda
rioja/data/SWAP.rda
rioja/data/RLGH.rda
rioja/data/Ponds.rda
rioja/R
rioja/R/bstick.r
rioja/R/inkspot.r
rioja/R/MR.r
rioja/R/LWR.r
rioja/R/consclust.r
rioja/R/MLRC.r
rioja/R/internals.r
rioja/R/gutils.r
rioja/R/utils.r
rioja/R/WAPLS.r
rioja/R/merge.r
rioja/R/WA.r
rioja/R/compare.datasets.r
rioja/R/zzz.r
rioja/R/interp.datasets.r
rioja/R/PTF.r
rioja/R/sp.plot.r
rioja/R/randomPTF.R
rioja/R/readC2Model.r
rioja/R/strat.plot.r
rioja/R/MAT.r
rioja/R/MLRC2.R
rioja/R/cep.r
rioja/R/IKFA.r
rioja/MD5
rioja/DESCRIPTION
rioja/man
rioja/man/read.C2Model.Rd rioja/man/strat.plot.Rd rioja/man/gutils.Rd rioja/man/WAPLS.Rd rioja/man/chclust.Rd rioja/man/compare.datasets.Rd rioja/man/utils.Rd rioja/man/read.Tilia.Rd rioja/man/strat.plot.simple.Rd rioja/man/randomPTF.Rd rioja/man/LWR.Rd rioja/man/RLGH.Rd rioja/man/sp.plot.Rd rioja/man/WA.Rd rioja/man/interp.dataset.Rd rioja/man/MR.Rd rioja/man/Merge.Rd rioja/man/read.CEP.Rd rioja/man/IKFA.Rd rioja/man/IK.Rd rioja/man/MLRC.Rd rioja/man/MAT.Rd rioja/man/aber.Rd rioja/man/Ponds.Rd rioja/man/PTF.Rd rioja/man/SWAP.Rd rioja/man/inkspot.Rd rioja/man/rioja-internal.Rd rioja/man/rioja.package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.