rioja: Analysis of Quaternary Science Data

Functions for the analysis of Quaternary science data, including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer functions, and stratigraphic diagrams.

Author
Steve Juggins
Date of publication
2016-07-13 14:52:28
Maintainer
Steve Juggins <Stephen.Juggins@ncl.ac.uk>
License
GPL (>= 2)
Version
0.9-9
URLs

View on CRAN

Man pages

aber
Abernethy Forest pollen data
chclust
Constrained hierarchical clustering
compare.datasets
Compare datasets for matching variables (species)
gutils
Graphic utilities.
IK
Imbrie and Kipp foraminifera data
IKFA
Imbrie & Kipp Factor Analysis
inkspot
Two-way ordered bubble plot of a species by sites data table
interp.dataset
Interpolate a dataset
LWR
Weighted averaging (LWR) regression and calibration
MAT
Palaeoenvironmental reconstruction using the Modern Analogue...
Merge
Merges two or more data frames on the basis of common column...
MLRC
Palaeoenvironmental reconstruction using Maximum Likelihood...
MR
Multiple regression
Ponds
Southeast England ponds and pools diatom and water chemistry...
PTF
Palaeoecological transfer functions
randomPTF
Random transfer functions to calculate variable importance
read.C2Model
Imports results from a C2 model into R
read.CEP
Reads and writes data in Cornell Ecology Program (CEP) format
read.Tilia
Read data in Tilia format
rioja-internal
Internal rioja functions.
rioja.package
Analysis of Quaternary Science Data
RLGH
Diatom stratigraphic data from the Round Loch of Glenhead,...
sp.plot
Plots species distributions along an environmental gradient
strat.plot
Plot a stratigraphic diagram
strat.plot.simple
Plot a simple stratigraphic diagram
SWAP
SWAP surface sediment diatom data and lake-water pH.
utils
Utility functions.
WA
Weighted averaging (WA) regression and calibration
WAPLS
Weighted averaging partial least squares (WAPLS) regression...

Files in this package

rioja
rioja/inst
rioja/inst/COPYING
rioja/inst/CITATION
rioja/inst/ChangeLog
rioja/inst/example.datasets
rioja/inst/example.datasets/WOLSFELD.TIL
rioja/inst/example.datasets/RLGHLongCore.cep
rioja/inst/example.datasets/C2_IK_Model.xls
rioja/src
rioja/src/dmatinv.cpp
rioja/src/fmt.h
rioja/src/wrtfmt.c
rioja/src/util.c
rioja/src/sysdep1.h
rioja/src/fio.h
rioja/src/cornellout.cpp
rioja/src/tilia.cpp
rioja/src/mlrc.cpp
rioja/src/mlrc.h
rioja/src/rsfe.c
rioja/src/sfe.c
rioja/src/nutil.h
rioja/src/rdfmt.c
rioja/src/dolio.c
rioja/src/nutil.cpp
rioja/src/newcinfuncs.c
rioja/src/mat.cpp
rioja/src/fmtlib.c
rioja/src/rawio.h
rioja/src/utils2.c
rioja/src/analog.c
rioja/src/wa.cpp
rioja/src/endfile.c
rioja/src/f2c.h
rioja/src/wapls.cpp
rioja/src/lread.c
rioja/src/open.c
rioja/src/tilfuncs.h
rioja/src/close.c
rioja/src/lio.h
rioja/src/err.c
rioja/src/s_copy.c
rioja/src/fmt.c
rioja/src/mat.h
rioja/src/chclust.cpp
rioja/src/fp.h
rioja/src/sig_die.c
rioja/src/wref.c
rioja/src/cornellin.cpp
rioja/src/tiliafuncs.cpp
rioja/src/lwrite.c
rioja/src/newcin2.cpp
rioja/NAMESPACE
rioja/data
rioja/data/IK.rda
rioja/data/aber.rda
rioja/data/SWAP.rda
rioja/data/RLGH.rda
rioja/data/Ponds.rda
rioja/R
rioja/R/bstick.r
rioja/R/inkspot.r
rioja/R/MR.r
rioja/R/LWR.r
rioja/R/consclust.r
rioja/R/MLRC.r
rioja/R/internals.r
rioja/R/gutils.r
rioja/R/utils.r
rioja/R/WAPLS.r
rioja/R/merge.r
rioja/R/WA.r
rioja/R/compare.datasets.r
rioja/R/zzz.r
rioja/R/interp.datasets.r
rioja/R/PTF.r
rioja/R/sp.plot.r
rioja/R/randomPTF.R
rioja/R/readC2Model.r
rioja/R/strat.plot.r
rioja/R/MAT.r
rioja/R/MLRC2.R
rioja/R/cep.r
rioja/R/IKFA.r
rioja/MD5
rioja/DESCRIPTION
rioja/man
rioja/man/read.C2Model.Rd
rioja/man/strat.plot.Rd
rioja/man/gutils.Rd
rioja/man/WAPLS.Rd
rioja/man/chclust.Rd
rioja/man/compare.datasets.Rd
rioja/man/utils.Rd
rioja/man/read.Tilia.Rd
rioja/man/strat.plot.simple.Rd
rioja/man/randomPTF.Rd
rioja/man/LWR.Rd
rioja/man/RLGH.Rd
rioja/man/sp.plot.Rd
rioja/man/WA.Rd
rioja/man/interp.dataset.Rd
rioja/man/MR.Rd
rioja/man/Merge.Rd
rioja/man/read.CEP.Rd
rioja/man/IKFA.Rd
rioja/man/IK.Rd
rioja/man/MLRC.Rd
rioja/man/MAT.Rd
rioja/man/aber.Rd
rioja/man/Ponds.Rd
rioja/man/PTF.Rd
rioja/man/SWAP.Rd
rioja/man/inkspot.Rd
rioja/man/rioja-internal.Rd
rioja/man/rioja.package.Rd