pbmcPlot: liger object of PBMC subsample data with plotting information...
In rliger: Linked Inference of Genomic Experimental Relationships
pbmcPlot R Documentation
liger object of PBMC subsample data with plotting information available
Description
This data was generated from data "pbmc" with default
parameter integration pipeline: normalize, selectGenes, scaleNotCenter,
runINMF, runCluster, runUMAP. To minimize the object size distributed with
the package, rawData and scaleData were removed. Genes are downsampled to
the top 50 variable genes, for smaller normData and W matrix.
Usage
pbmcPlot
Format
liger object with two datasets named by "ctrl" and
"stim".
Source
https://www.nature.com/articles/nbt.4042
References
Hyun Min Kang and et. al., Nature Biotechnology, 2018
rliger documentation built on Oct. 30, 2024, 1:07 a.m.
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| pbmcPlot | R Documentation |
liger object of PBMC subsample data with plotting information available
Description
This data was generated from data "pbmc" with default
parameter integration pipeline: normalize, selectGenes, scaleNotCenter,
runINMF, runCluster, runUMAP. To minimize the object size distributed with
the package, rawData and scaleData were removed. Genes are downsampled to
the top 50 variable genes, for smaller normData and W matrix.
Usage
pbmcPlot
Format
liger object with two datasets named by "ctrl" and "stim".
Source
https://www.nature.com/articles/nbt.4042
References
Hyun Min Kang and et. al., Nature Biotechnology, 2018
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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