peak: Access ligerATACDataset peak data

In rliger: Linked Inference of Genomic Experimental Relationships

Access ligerATACDataset peak data

Description

Similar as how default ligerDataset data is accessed.

Usage

rawPeak(x, dataset)

rawPeak(x, dataset, check = TRUE) <- value

normPeak(x, dataset)

normPeak(x, dataset, check = TRUE) <- value

## S4 method for signature 'liger,character'
rawPeak(x, dataset)

## S4 replacement method for signature 'liger,character'
rawPeak(x, dataset, check = TRUE) <- value

## S4 method for signature 'liger,character'
normPeak(x, dataset)

## S4 replacement method for signature 'liger,character'
normPeak(x, dataset, check = TRUE) <- value

## S4 method for signature 'ligerATACDataset,missing'
rawPeak(x, dataset = NULL)

## S4 replacement method for signature 'ligerATACDataset,missing'
rawPeak(x, dataset = NULL, check = TRUE) <- value

## S4 method for signature 'ligerATACDataset,missing'
normPeak(x, dataset = NULL)

## S4 replacement method for signature 'ligerATACDataset,missing'
normPeak(x, dataset = NULL, check = TRUE) <- value

Arguments

x	ligerATACDataset object or a liger object.
dataset	Name or numeric index of an ATAC dataset.
check	Logical, whether to perform object validity check on setting new value.
value	dgCMatrix-class matrix.

Value

The retrieved peak count matrix or the updated x object.

rliger documentation built on Oct. 30, 2024, 1:07 a.m.