API for robustSingleCell
Robust Clustering of Single Cell RNA-Seq Data
| Global functions | |
|---|---|
| PCA | Man page Source code |
| Rphenograph | Man page Source code |
| add.confounder.variables | Man page Source code |
| apply.by.group | Source code |
| assess.cluster.similarity | Man page Source code |
| background.genes | Source code |
| capwords | Source code |
| cell.cycle.score | Man page Source code |
| check_not_slurm | Source code |
| cluster | Source code |
| cluster.analysis | Man page Source code |
| controlled.mean.score | Man page Source code |
| convertHumanGeneList | Source code |
| corner | Source code |
| download_LCMV | Man page Source code |
| elapsed.time | Source code |
| end | Source code |
| filter.data | Source code |
| filter.robust.clusters | Source code |
| filter_cluster_data | Man page Source code |
| find_neighbors | Man page Source code |
| get.cluster.names | Man page Source code |
| get.cluster.names.with.diff | Source code |
| get.clustering.results | Source code |
| get.mito.genes | Source code |
| get.ribo.genes | Source code |
| get.robust.cluster.similarity | Man page Source code |
| get.robust.markers | Man page |
| get.technically.similar.genes | Source code |
| get.time | Source code |
| get.variable.genes | Man page Source code |
| getDE.limma | Source code |
| get_dist | Source code |
| get_slurm_out | Source code |
| group.by | Source code |
| initialize.project | Man page Source code |
| jaccard_coeff | Source code |
| load.cluster.names | Source code |
| local_slurm_array | Source code |
| mitochondrial.score | Man page Source code |
| nGenes | Source code |
| nUMIs | Source code |
| pearson.correlation | Source code |
| plot.cluster.stats | Source code |
| plot.expression.heatmap.based.on.FC.marker | Source code |
| plot.heatmaps | Source code |
| plot.tSNE | Source code |
| plot.violin | Source code |
| plot_PCA | Man page Source code |
| plot_contour_overlay_tSNE | Man page |
| plot_pair_scatter | Man page |
| plot_simple_heatmap | Man page Source code |
| print.message | Source code |
| read.data | Man page Source code |
| read.preclustered.datasets | Man page Source code |
| read_10x_data | Man page Source code |
| regress.covariates | Source code |
| remove.cluster.names | Source code |
| ribosomal.score | Man page Source code |
| run.diff.expression | Source code |
| run_tSNE | Man page Source code |
| set.cluster.names | Man page Source code |
| setup_LCMV_example | Man page Source code |
| setup_pooled_env | Man page Source code |
| start | Source code |
| summarize | Man page Source code |
| visualize.cluster.cors.heatmaps | Man page Source code |
| visualize.cluster.similarity.stats | Man page Source code |
