mitochondrial.score: Compute Mitochondrial Score

In robustSingleCell: Robust Clustering of Single Cell RNA-Seq Data

Description

Compute the activation level of mitochondrial genes.

Usage

mitochondrial.score(environment, control = F, knn = 10)

Arguments

environment	environment object
control	whether to subtract the score defined by technically similar genes
knn	number of nearest neighbor

Value

a vector of mitochondrial genes activation score

Examples

LCMV1 <- setup_LCMV_example()
mitochondrial.score <- mitochondrial.score(LCMV1)

robustSingleCell documentation built on May 2, 2019, 2:11 p.m.