Man pages for robustSingleCell
Robust Clustering of Single Cell RNA-Seq Data
| add.confounder.variables | Add Confounder Variables |
| assess.cluster.similarity | Assess Cluster Similarity |
| cell.cycle.score | Compute Cell Cycle Score |
| cluster.analysis | Distributed Clustering Analysis |
| controlled.mean.score | Compute Controlled Activation Score |
| download_LCMV | Download Example Dataset |
| filter_cluster_data | Remove selected clusters |
| find_neighbors | K Nearest Neighbour Search |
| get.cluster.names | Get/Set Cluster Names by Marker Gene Expression |
| get.robust.cluster.similarity | Get Robust Cluster Similarity |
| get.robust.markers | Get Robust Marker |
| get.variable.genes | Identify Highly Variable Genes |
| initialize.project | Intialize the Project Environment |
| mitochondrial.score | Compute Mitochondrial Score |
| PCA | Parallelized PCA Analysis |
| plot_contour_overlay_tSNE | Plot Gene Expression on tSNE |
| plot_pair_scatter | Plot Pairwise Gene Scatter Plot |
| plot_PCA | Plot PCA results |
| plot_simple_heatmap | Plot heatmap |
| read_10x_data | Read 10X Data |
| read.data | Read and Preprocess Data |
| read.preclustered.datasets | Read Preclustered Datasets |
| ribosomal.score | Compute Ribosomal Score |
| Rphenograph | RphenoGraph clustering |
| run_tSNE | Perform tSNE Analyses |
| setup_LCMV_example | Set up LCMV1 example |
| setup_pooled_env | Set up the pooled environment |
| summarize | Differential Expression and Figure Generation |
| visualize.cluster.cors.heatmaps | Visualize Correlation |
| visualize.cluster.similarity.stats | Plot Similarity Results |
