rtemis.a3: Amino Acid Annotation (A3) Format

Implements the Amino Acid Annotation (A3) format using 'S7' classes. The A3 format is a structured schema for annotating amino acid sequences with site, region, post-translational modification (PTM), processing event, and variant information. Provides functions to create, read, and write A3 objects, and to import annotations from 'UniProt', 'AlphaFold', 'PDBe', 'ClinVar', and 'Ensembl'.

Package details

AuthorE.D. Gennatas [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-9280-3609>)
MaintainerE.D. Gennatas <gennatas@gmail.com>
LicenseGPL (>= 3)
Version0.5.3
URL https://a3.rtemis.org
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("rtemis.a3")

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rtemis.a3 documentation built on April 29, 2026, 1:06 a.m.