Man pages for rtemis.a3
Amino Acid Annotation (A3) Format
| aa_sub | Perform amino acid substitutions |
| annotation_position | Create position-based annotations for A3 |
| annotation_range | Create range-based annotations for A3 |
| annotation_variant | Create variant annotations for A3 |
| clinvar_variants | Fetch ClinVar variants for a gene and parse them into... |
| concat | Concatenate character vector to single string for sequence... |
| create_A3 | Create an A3 object from sequence, annotations, and metadata |
| gene2sequence | Get the coding sequence of a gene |
| get_alphafold | Get AlphaFold info for a given UniProt ID |
| pdb_annotations | Fetch PDB structural annotations for a UniProt accession |
| read_A3json | Read 'A3' object from JSON file |
| rtemis.a3-package | rtemis.a3: Amino Acid Annotation format |
| uniprot_sequence | Fetch a protein sequence from UniProt |
| uniprot_to_A3 | Fetch a UniProt entry and parse it into an A3 object |
| write_A3json | Write 'A3' object to JSON file |
