uniprot_sequence: Fetch a protein sequence from UniProt

In rtemis.a3: Amino Acid Annotation (A3) Format

Fetch a protein sequence from UniProt

Description

Lightweight FASTA-only fetch. Use this when you only need the amino acid sequence. For full annotations and metadata use uniprot_to_A3().

Usage

uniprot_sequence(
  accession,
  base_url = "https://rest.uniprot.org/uniprotkb",
  verbosity = 1L
)

Arguments

accession	Character scalar: UniProt accession, e.g. "P10636".
base_url	Character scalar: UniProt REST API base URL.
verbosity	Integer scalar: Verbosity level.

Value

Character scalar: amino acid sequence in single-letter code.

Author(s)

EDG

Examples

# Requires internet connection and fetches data from UniProt.
## Not run: 
  seq <- uniprot_sequence("P10636")

## End(Not run)

rtemis.a3 documentation built on April 29, 2026, 1:06 a.m.