Get_Reference_LIGER: Get Reference Dataset

In scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Get Reference Dataset

Description

Function to select reference dataset to use in liger based on meta data information

Usage

Get_Reference_LIGER(liger_object, meta_data_column, value)

Arguments

liger_object	LIGER object name.
meta_data_column	meta data column to use for selecting largest dataset.
value	value from column meta_data_column to use for selecting largest dataset.

Value

dataset name as character

Examples

## Not run: 
# standalone use
ref_dataset <- Get_Reference_LIGER(liger_object = object, meta_data_column = "Treatment",
value = "Ctrl")

# use within `quantileNorm`
object <- quantileNorm(object = object, reference = Get_Reference_LIGER(liger_object = object,
meta_data_column = "Treatment", value = "Ctrl"))

## End(Not run)

scCustomize documentation built on Aug. 26, 2025, 9:08 a.m.