View source: R/Read_&_Write_Data.R
Read_Add_cNMF | R Documentation |
Reads the usage and spectra files from cNMF results and adds them as dimensionality reduction to seurat object.
Read_Add_cNMF(
seurat_object,
usage_file,
spectra_file,
normalize = TRUE,
assay = NULL
)
seurat_object |
Seurat object name to add cNMF reduction |
usage_file |
path and name of cNMF usage file |
spectra_file |
path and name of cNMF spectra file |
normalize |
logical, whether to normalize the cNMF usage data, default is TRUE |
assay |
assay to add reduction. Default is NULL and will use current active assay. |
Seurat object with new dimensionality reduction "cnmf"
For more information about cNMF and usage see https://github.com/dylkot/cNMF
## Not run:
object <- Read_cNMF(seurat_object = object,
usage_file = "example_cNMF/example_cNMF.usages.k_27.dt_0_01.consensus.txt",
spectra_file = "example_cNMF/example_cNMF.gene_spectra_score.k_27.dt_0_01.txt")
## End(Not run)
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