convert_loom_to_anndata: Convert Loom to AnnData
In scFlex: Flexible Conversion Between Single-Cell Data Objects
convert_loom_to_anndata R Documentation
Convert Loom to AnnData
Description
Reads a Loom file through AnnData and writes the resulting object as H5AD while preserving components supported by the Loom-to-AnnData reader.
Usage
convert_loom_to_anndata(input, output)
Arguments
input
Path to an input .loom file.
output
Path to the output .h5ad file.
Details
Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.
Value
The output path, returned invisibly.
scFlex documentation built on Sept. 29, 2026, 5:10 p.m.
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| convert_loom_to_anndata | R Documentation |
Convert Loom to AnnData
Description
Reads a Loom file through AnnData and writes the resulting object as H5AD while preserving components supported by the Loom-to-AnnData reader.
Usage
convert_loom_to_anndata(input, output)
Arguments
input |
Path to an input |
output |
Path to the output |
Details
Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.
Value
The output path, returned invisibly.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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