convert_sce_to_loom: Convert SingleCellExperiment to Loom
In scFlex: Flexible Conversion Between Single-Cell Data Objects
convert_sce_to_loom R Documentation
Convert SingleCellExperiment to Loom
Description
Reads a SingleCellExperiment RDS object and writes a Loom file using loompy, preserving supported assays, attributes, and reductions where representable.
Usage
convert_sce_to_loom(input, output)
Arguments
input
Path to an input SingleCellExperiment .rds file.
output
Path to the output .loom file.
Details
Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.
Value
The output path, returned invisibly.
scFlex documentation built on Sept. 29, 2026, 5:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| convert_sce_to_loom | R Documentation |
Convert SingleCellExperiment to Loom
Description
Reads a SingleCellExperiment RDS object and writes a Loom file using loompy, preserving supported assays, attributes, and reductions where representable.
Usage
convert_sce_to_loom(input, output)
Arguments
input |
Path to an input SingleCellExperiment |
output |
Path to the output |
Details
Loom is a more limited interchange format than Seurat, SingleCellExperiment, or AnnData, so only components representable by the current mapping are preserved.
Value
The output path, returned invisibly.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.