convert_sc: Convert between supported single-cell formats
In scFlex: Flexible Conversion Between Single-Cell Data Objects
convert_sc R Documentation
Convert between supported single-cell formats
Description
Dispatches a file conversion between Seurat, SingleCellExperiment, AnnData, and Loom using the corresponding scFlex conversion function.
Usage
convert_sc(input, source, destination, output)
Arguments
input
Character string giving the path to the input file.
source
Character string naming the source format. Supported values are "seurat", "sce", "anndata", and "loom". Matching is case-insensitive.
destination
Character string naming the destination format. Supported values are "seurat", "sce", "anndata", and "loom". Matching is case-insensitive.
output
Character string giving the output file path.
Details
Source and destination must differ. Unsupported format names or unimplemented conversion paths produce an error.
Value
The result returned by the selected conversion function, invisibly. Current converters normally return the output path invisibly; some conversions may return NULL invisibly when required count data cannot be identified.
scFlex documentation built on Sept. 29, 2026, 5:10 p.m.
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| convert_sc | R Documentation |
Convert between supported single-cell formats
Description
Dispatches a file conversion between Seurat, SingleCellExperiment, AnnData, and Loom using the corresponding scFlex conversion function.
Usage
convert_sc(input, source, destination, output)
Arguments
input |
Character string giving the path to the input file. |
source |
Character string naming the source format. Supported values are |
destination |
Character string naming the destination format. Supported values are |
output |
Character string giving the output file path. |
Details
Source and destination must differ. Unsupported format names or unimplemented conversion paths produce an error.
Value
The result returned by the selected conversion function, invisibly. Current converters normally return the output path invisibly; some conversions may return NULL invisibly when required count data cannot be identified.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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