convert_seurat_to_anndata: Convert Seurat to AnnData
In scFlex: Flexible Conversion Between Single-Cell Data Objects
View source: R/convert_seurat.R
convert_seurat_to_anndata R Documentation
Convert Seurat to AnnData
Description
Reads a Seurat RDS object and writes an H5AD AnnData file while preserving
supported counts, normalized expression, metadata, feature metadata, and
dimensional reductions.
Usage
convert_seurat_to_anndata(input, output, assay = "RNA")
Arguments
input
Path to an input Seurat .rds file.
output
Path to the output .h5ad file.
assay
Name of the Seurat assay to convert. Defaults to "RNA".
Value
The output path, returned invisibly.
scFlex documentation built on Sept. 29, 2026, 5:10 p.m.
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View source: R/convert_seurat.R
| convert_seurat_to_anndata | R Documentation |
Convert Seurat to AnnData
Description
Reads a Seurat RDS object and writes an H5AD AnnData file while preserving supported counts, normalized expression, metadata, feature metadata, and dimensional reductions.
Usage
convert_seurat_to_anndata(input, output, assay = "RNA")
Arguments
input |
Path to an input Seurat |
output |
Path to the output |
assay |
Name of the Seurat assay to convert. Defaults to |
Value
The output path, returned invisibly.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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