cell: Cell-Level Metadata (AMD Example Data)

In scNPM: Single-Cell Network Propensity Matching

Cell-Level Metadata (AMD Example Data)

Description

A data frame with per-cell metadata (quality-control metrics computed with scater, sample provenance and the PR_or_MR region indicator) for the 400 cells of the AMD example subset (200 PR, 200 MR). Rows are aligned with the columns of goal_gene_mt. The first example covariate column in run_scNPM is typically built from PR_or_MR (1 = MR, treatment; 0 = PR, control).

Usage

data(top50_goal_gene_mt)

Format

A data frame with 400 rows and 52 columns: cell barcodes (Barcode), cell type labels (Labels), the region indicator PR_or_MR, donor identifier (individual), tissue, spatial coordinates (x, y), and scater quality-control metrics (columns prefixed scater_qc.: library size, detected features, percentage of counts in top features, mitochondrial percentage, etc.).

Source

Derived from a public single-cell RNA-seq study of human retinas (see the scNPM reference publication).

scNPM documentation built on Oct. 19, 2026, 5:10 p.m.