goal_gene_mt: Top-50 Gene Expression Matrix (AMD Example Data)

In scNPM: Single-Cell Network Propensity Matching

Top-50 Gene Expression Matrix (AMD Example Data)

Description

Sparse UMI count matrix (genes x cells) for the 50 target genes used in the AMD (age-related macular degeneration) example analysis. This is a stratified random subset (200 PR control and 200 MR treatment cells) of the full 20091-cell dataset, drawn with a fixed seed. Loaded via data(top50_goal_gene_mt) together with the companion objects cell, goal_gene, mt, cols_to_PR and cols_to_MR.

Usage

data(top50_goal_gene_mt)

Format

A dgTMatrix with 50 rows (genes) and 400 columns (cells); entries are raw UMI counts.

Source

Derived from a public single-cell RNA-seq study of human retinas (see the scNPM reference publication).

scNPM documentation built on Oct. 19, 2026, 5:10 p.m.