scape: Statistical Catch-at-Age Plotting Environment

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Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

Author
Arni Magnusson [aut, cre]
Date of publication
2014-03-12 18:04:05
Maintainer
Arni Magnusson <arnima@hafro.is>
License
GPL (>= 2)
Version
2.2-0

View on CRAN

Man pages

estN
Estimate Effective Sample Size
estSigmaI
Estimate Abundance Index Sigma
estSigmaR
Estimate Recruitment Sigma
getN
Extract Sample Size
getSigmaI
Extract Abundance Index Sigma
getSigmaR
Extract Recruitment sigma
importCol
Import Coleraine Model Results
importMCMC
Import Coleraine MCMC Results
importProj
Import Coleraine MCMC Projections
iterate
Get Candidate Sigmas and Sample Sizes
plotB
Plot Biomass, Recruitment, and Landings
plotCA
Plot Catch at Age
plotCL
Plot Catch at Length
plotIndex
Plot Abundance Index
plotLA
Plot Length at Age
plotN
Plot Numbers at Age
plotSel
Plot Selectivity and Maturity
scape-package
Statistical Catch-at-Age Plotting Environment
x.cod
Cod Assessment
x.ling
Ling Assessment
xmcmc
MCMC Results from Cod Assessment
x.oreo
Oreo Assessment
xproj
MCMC Projections from Cod Assessment
x.sbw
Whiting Assessment

Files in this package

scape
scape/inst
scape/inst/example
scape/inst/example/oreo.txt
scape/inst/example/ling.res
scape/inst/example/mcmc
scape/inst/example/mcmc/recruits.pst
scape/inst/example/mcmc/params.pst
scape/inst/example/mcmc/strategy.out
scape/inst/example/mcmc/projspbm.out
scape/inst/example/mcmc/mcmclike.out
scape/inst/example/mcmc/spawbiom.pst
scape/inst/example/mcmc/procatch.out
scape/inst/example/oreo.res
scape/inst/example/cod.res
scape/inst/example/sbw.res
scape/inst/example/l_at_age.dat
scape/inst/doc
scape/inst/doc/dsc-vignette.Rnw
scape/inst/doc/mymodel.pdf
scape/inst/doc/gallery.Rnw
scape/inst/doc/mymodel.Rnw
scape/inst/doc/gallery.R
scape/inst/doc/dsc-vignette.pdf
scape/inst/doc/gallery.pdf
scape/NAMESPACE
scape/NEWS
scape/data
scape/data/x.oreo.rda
scape/data/x.sbw.rda
scape/data/x.ling.rda
scape/data/x.cod.rda
scape/data/xproj.rda
scape/data/xmcmc.rda
scape/data/datalist
scape/R
scape/R/getSigmaI.R
scape/R/importMCMC.R
scape/R/getSigmaR.R
scape/R/plotB.R
scape/R/iterate.R
scape/R/estSigmaR.R
scape/R/plotCL.R
scape/R/plotSel.R
scape/R/importProj.R
scape/R/plotCA.R
scape/R/plotLA.R
scape/R/plotN.R
scape/R/importCol.R
scape/R/getN.R
scape/R/estSigmaI.R
scape/R/estN.R
scape/R/plotIndex.R
scape/vignettes
scape/vignettes/dsc-vignette.Rnw
scape/vignettes/dsc.pdf
scape/vignettes/gallery.Rnw
scape/vignettes/mymodel.Rnw
scape/MD5
scape/build
scape/build/vignette.rds
scape/DESCRIPTION
scape/man
scape/man/x.sbw.Rd
scape/man/plotLA.Rd
scape/man/x.oreo.Rd
scape/man/estSigmaI.Rd
scape/man/importProj.Rd
scape/man/x.ling.Rd
scape/man/getN.Rd
scape/man/getSigmaI.Rd
scape/man/getSigmaR.Rd
scape/man/importCol.Rd
scape/man/x.cod.Rd
scape/man/plotCA.Rd
scape/man/estN.Rd
scape/man/plotB.Rd
scape/man/estSigmaR.Rd
scape/man/xproj.Rd
scape/man/plotIndex.Rd
scape/man/iterate.Rd
scape/man/plotN.Rd
scape/man/importMCMC.Rd
scape/man/plotSel.Rd
scape/man/scape-package.Rd
scape/man/xmcmc.Rd
scape/man/plotCL.Rd