scape: Statistical Catch-at-Age Plotting Environment
Version 2.2-0

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

AuthorArni Magnusson [aut, cre]
Date of publication2014-03-12 18:04:05
MaintainerArni Magnusson <arnima@hafro.is>
LicenseGPL (>= 2)
Version2.2-0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("scape")

Getting started

Package overview

Popular man pages

estN: Estimate Effective Sample Size
getN: Extract Sample Size
plotB: Plot Biomass, Recruitment, and Landings
plotSel: Plot Selectivity and Maturity
x.cod: Cod Assessment
xproj: MCMC Projections from Cod Assessment
x.sbw: Whiting Assessment
See all...

All man pages Function index File listing

Man pages

estN: Estimate Effective Sample Size
estSigmaI: Estimate Abundance Index Sigma
estSigmaR: Estimate Recruitment Sigma
getN: Extract Sample Size
getSigmaI: Extract Abundance Index Sigma
getSigmaR: Extract Recruitment sigma
importCol: Import Coleraine Model Results
importMCMC: Import Coleraine MCMC Results
importProj: Import Coleraine MCMC Projections
iterate: Get Candidate Sigmas and Sample Sizes
plotB: Plot Biomass, Recruitment, and Landings
plotCA: Plot Catch at Age
plotCL: Plot Catch at Length
plotIndex: Plot Abundance Index
plotLA: Plot Length at Age
plotN: Plot Numbers at Age
plotSel: Plot Selectivity and Maturity
scape-package: Statistical Catch-at-Age Plotting Environment
x.cod: Cod Assessment
x.ling: Ling Assessment
xmcmc: MCMC Results from Cod Assessment
x.oreo: Oreo Assessment
xproj: MCMC Projections from Cod Assessment
x.sbw: Whiting Assessment

Functions

Files

inst
inst/example
inst/example/oreo.txt
inst/example/ling.res
inst/example/mcmc
inst/example/mcmc/recruits.pst
inst/example/mcmc/params.pst
inst/example/mcmc/strategy.out
inst/example/mcmc/projspbm.out
inst/example/mcmc/mcmclike.out
inst/example/mcmc/spawbiom.pst
inst/example/mcmc/procatch.out
inst/example/oreo.res
inst/example/cod.res
inst/example/sbw.res
inst/example/l_at_age.dat
inst/doc
inst/doc/dsc-vignette.Rnw
inst/doc/mymodel.pdf
inst/doc/gallery.Rnw
inst/doc/mymodel.Rnw
inst/doc/gallery.R
inst/doc/dsc-vignette.pdf
inst/doc/gallery.pdf
NAMESPACE
NEWS
data
data/x.oreo.rda
data/x.sbw.rda
data/x.ling.rda
data/x.cod.rda
data/xproj.rda
data/xmcmc.rda
data/datalist
R
R/getSigmaI.R
R/importMCMC.R
R/getSigmaR.R
R/plotB.R
R/iterate.R
R/estSigmaR.R
R/plotCL.R
R/plotSel.R
R/importProj.R
R/plotCA.R
R/plotLA.R
R/plotN.R
R/importCol.R
R/getN.R
R/estSigmaI.R
R/estN.R
R/plotIndex.R
vignettes
vignettes/dsc-vignette.Rnw
vignettes/dsc.pdf
vignettes/gallery.Rnw
vignettes/mymodel.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/x.sbw.Rd
man/plotLA.Rd
man/x.oreo.Rd
man/estSigmaI.Rd
man/importProj.Rd
man/x.ling.Rd
man/getN.Rd
man/getSigmaI.Rd
man/getSigmaR.Rd
man/importCol.Rd
man/x.cod.Rd
man/plotCA.Rd
man/estN.Rd
man/plotB.Rd
man/estSigmaR.Rd
man/xproj.Rd
man/plotIndex.Rd
man/iterate.Rd
man/plotN.Rd
man/importMCMC.Rd
man/plotSel.Rd
man/scape-package.Rd
man/xmcmc.Rd
man/plotCL.Rd
scape documentation built on May 19, 2017, 9:39 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

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