plotSel: Plot Selectivity and Maturity

Description Usage Arguments Value Note See Also Examples

View source: R/plotSel.R

Description

Plot scape model predicted selectivity and observed maturity.

Usage

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plotSel(model, together=FALSE, series=NULL, sex=NULL, axes=TRUE,
        legend="bottom", main="", xlab="", ylab="", cex.main=1.2,
        cex.legend=1, cex.lab=1, cex.axis=0.8, cex.strip=0.8,
        col.strip="gray95", strip=strip.custom(bg=col.strip), las=1,
        tck=0, tick.number=5, lty.grid=3, col.grid="gray", pch="m",
        cex.points=1, col.points="black", lty.lines=1, lwd.lines=4,
        col.lines=c("red","blue"), plot=TRUE, ...)

Arguments

model

fitted scape model.

together

whether to plot gears in one panel.

series

vector of strings indicating which gears or surveys to plot (all by default).

sex

string indicating which sex to plot (both by default).

axes

whether to plot axis values.

legend

legend location: "bottom", "left", "top", "right", or "" to suppress legend.

main

main title.

xlab

x-axis label.

ylab

y-axis label.

cex.main

size of main title.

cex.legend

size of legend text.

cex.lab

size of axis labels.

cex.axis

size of tick labels.

cex.strip

size of strip labels.

strip

logical flag (whether to plot strip labels), or a function passed to xyplot.

col.strip

color of strip labels.

las

orientation of tick labels: 0=parallel, 1=horizontal, 2=perpendicular, 3=vertical.

tck

tick mark length.

tick.number

number of tick marks.

lty.grid

line type of gridlines.

col.grid

color of gridlines.

pch

symbol for points.

cex.points

size of points.

col.points

color of points.

lty.lines

line type of main lines.

lwd.lines

line width of main lines.

col.lines

color of main lines.

plot

whether to draw plot.

...

passed to xyplot, panel.points, panel.lines, and panel.superpose.

Value

When plot=TRUE, a trellis plot is drawn and a data frame is returned, containing the data used for plotting. When plot=FALSE, a trellis object is returned.

Note

The Args function from the gdata package is recommended for reviewing the arguments, instead of args.

See Also

xyplot, panel.points, panel.lines, and panel.superpose are the underlying drawing functions.

plotCA, plotCL, plotIndex, and plotLA plot model fit and data.

plotB, plotN, and plotSel plot derived quantities.

scape-package gives an overview of the package.

Examples

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plotSel(x.ling, xlab="Age", ylab="Selectivity and maturity")

plotSel(x.cod, together=TRUE, xlab="Age\n", ylab="Selectivity",
        pch=NA, col.lines=c("coral","navyblue"), strip=FALSE)

scape documentation built on May 2, 2018, 1:04 a.m.