Markov chain Monte Carlo results from stock assessment of cod (Gadus morhua) in Icelandic waters.
List containing four data frames:
|| likelihood components:
|| estimated parameters:
||predicted biomass (age 4+) by year.|
||predicted recruitment by year.|
x.cod help page for details about the data and
The list was imported from the files ‘mcmclike.out’,
‘params.pst’, ‘spawbiom.pst’ and ‘recruits.pst’, using
importMCMC() function. These files can be found in the
ll (package gdata) and
are recommended for browsing nested objects, e.g.
The plotMCMC package is recommended for plotting MCMC diagnostics and posteriors.
Magnusson, A., Punt, A. E., and Hilborn, R. (2013) Measuring uncertainty in fisheries stock assessment: the delta method, bootstrap, and MCMC. Fish and Fisheries 14, 325–342.
importMCMC was used to import the MCMC results.
scape-package gives an overview of the package.
# See examples in package 'plotMCMC'
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.