scidb: An R Interface to SciDB

An R interface to the SciDB array database (http://scidb.org).

Author
Paradigm4, B. W. Lewis
Date of publication
2015-04-01 19:29:44
Maintainer
B. W. Lewis <blewis@illposed.net>
License
AGPL-3
Version
1.2-0
URLs

View on CRAN

Man pages

aggregate-methods
Methods for Function 'aggregate' in Package 'scidb'
all.equal
Test if two SciDB arrays are equal in content
antijoin
antijoin
as.scidb
Upload an R vector, matrix or data.frame to a SciDB array.
attribute_rename
Rename an attribute.
bernoulli
Sample from populated cells in a SciDB array.
between
between
bind
bind
build
build
cast
Low-level SciDB cast operator
chunk_map
chunk_map
c-methods
Concatenate SciDB arrays
comparison-methods
Masking comparison methods from package 'scidb'
cumulate
cumulate
df2scidb
Copy a data frame into a SciDB array.
diff.scidb
diff
dimension_rename
Rename a dimension.
dimensions
dimensions
dimnames.scidb
dimnames
dim.scidb
dim
dist
Distance Matrix Computation
factor_scidb
Hybrid R/SciDB factors
glm.fit
Fitting generalized linear models
grand-methods
Miscellaneous methods from package 'scidb'
hist-method
Methods for Function 'hist' in Package 'scidb'
hypergeometric-methods
Hypergeometric functions in Package 'scidb'
index_lookup
index_lookup
iquery
Simple SciDB query tool
is.scidb
is.scidb
is.scidbdf
is.scidbdf
is.temp
is.temp
kmeans
kmeans
lag
lag
length.scidb
length
levels_scidb
Hybrid R/SciDB factors
merge-methods
Methods for Function 'merge' in Package 'scidb'
na.locf-method
Methods for Function 'na.locf' in Package 'scidb'
names.scidb
Dimension names
nrow.scidb
Number of rows or columns of a SciDB matrix.
Ops.scidb
Binary scidb object operations.
order
Methods for Function 'order' in Package 'scidb'
peek
Sample from populated cells in a SciDB array.
persist
persist
predict.glm_scidb
Prediction for SciDB GLM fits
print.scidb
Print a summary of a SciDB array object.
project
project
quantile
Sample Quantiles
rank
Methods for Function 'rank' in Package 'scidb'
redimension
redimension
remove_old_versions
Remove all but most recent SciDB versions of an array.
rename
Rename a SciDB array.
repart
repart
replaceNA
Replace SciDB NULL values with another value.
reshape-method
Methods for Function 'reshape' in Package 'scidb'
schema
schema
scidb
Create a 'scidb' reference object.
scidb_attributes
Scidb schema utilities
scidb-class
Class '"scidb"'
scidbconnect
Connect to a SciDB database.
scidbdf-class
Class '"scidbdf"'
scidbdisconnect
Disconnect from a SciDB database.
scidbeval
scidbeval
scidb_fisher.test
scidb_fisher.test
scidblist
List SciDB database items.
scidb-package
SciDB interface package.
scidbremove
Remove an array.
show_commit_log
Display recent package software repository commit log entries
slice
Low-level SciDB slice operator
sort-methods
Methods for Function 'sort' in Package 'scidb'
str.scidb
Show the structure of a scidb object.
subarray
Wrapper for SciDB subarray and between operators
subset-methods
Methods for Function 'subset' in Package 'scidb'
summary.scidb
Summarize scidb object class.
svd
svd
sweep-methods
Methods for Function 'sweep' in Package 'scidb'
tsvd
tsvd
unbound
Return a bounded or unbounded version of a SciDB array

Files in this package

scidb
scidb/inst
scidb/inst/misc
scidb/inst/misc/log
scidb/inst/misc/image.jpg
scidb/inst/misc-documentation
scidb/inst/misc-documentation/p4logo.jpg
scidb/inst/misc-documentation/list.functions
scidb/inst/misc-documentation/extra_ops
scidb/inst/misc-documentation/README
scidb/inst/misc-documentation/Rlogo.jpg
scidb/inst/misc-documentation/scidblogo.jpg
scidb/inst/misc-documentation/scidb.Rnw
scidb/inst/misc-documentation/Sweave.sty
scidb/inst/doc
scidb/inst/doc/scidb.pdf
scidb/inst/doc/scidb.Rnw
scidb/tests
scidb/tests/scidb.R
scidb/tests/scidbdf.R
scidb/src
scidb/src/scidb.c
scidb/src/Makevars.win
scidb/src/parse.c
scidb/NAMESPACE
scidb/NEWS
scidb/R
scidb/R/classes.R
scidb/R/scidb-arithmetic.R
scidb/R/scidbdf-methods.R
scidb/R/aggregate.R
scidb/R/pkg.R
scidb/R/glm.R
scidb/R/scidbdf-functions.R
scidb/R/utility.R
scidb/R/scidb-indexing-functions.R
scidb/R/distributions.R
scidb/R/scidb-functions.R
scidb/R/schema-utils.R
scidb/R/redim.R
scidb/R/special_index.R
scidb/R/scidb-methods.R
scidb/R/merge.R
scidb/R/misc.R
scidb/R/dbops.R
scidb/vignettes
scidb/vignettes/p4logo.jpg
scidb/vignettes/Rlogo.jpg
scidb/vignettes/scidblogo.jpg
scidb/vignettes/scidb.Rnw
scidb/README.md
scidb/MD5
scidb/README
scidb/build
scidb/build/vignette.rds
scidb/DESCRIPTION
scidb/man
scidb/man/str.scidb.Rd
scidb/man/replaceNA.Rd
scidb/man/scidb.Rd
scidb/man/unbound.Rd
scidb/man/hist-method.Rd
scidb/man/as.scidb.Rd
scidb/man/factor_scidb.Rd
scidb/man/cast.Rd
scidb/man/tsvd.Rd
scidb/man/scidbeval.Rd
scidb/man/chunk_map.Rd
scidb/man/quantile.Rd
scidb/man/schema.Rd
scidb/man/diff.scidb.Rd
scidb/man/antijoin.Rd
scidb/man/scidb-class.Rd
scidb/man/iquery.Rd
scidb/man/svd.Rd
scidb/man/remove_old_versions.Rd
scidb/man/dim.scidb.Rd
scidb/man/all.equal.Rd
scidb/man/attribute_rename.Rd
scidb/man/bind.Rd
scidb/man/scidbremove.Rd
scidb/man/subset-methods.Rd
scidb/man/Ops.scidb.Rd
scidb/man/sort-methods.Rd
scidb/man/names.scidb.Rd
scidb/man/levels_scidb.Rd
scidb/man/show_commit_log.Rd
scidb/man/between.Rd
scidb/man/dimensions.Rd
scidb/man/scidb_fisher.test.Rd
scidb/man/predict.glm_scidb.Rd
scidb/man/hypergeometric-methods.Rd
scidb/man/subarray.Rd
scidb/man/index_lookup.Rd
scidb/man/project.Rd
scidb/man/df2scidb.Rd
scidb/man/scidb_attributes.Rd
scidb/man/kmeans.Rd
scidb/man/cumulate.Rd
scidb/man/redimension.Rd
scidb/man/scidbconnect.Rd
scidb/man/glm.fit.Rd
scidb/man/comparison-methods.Rd
scidb/man/rename.Rd
scidb/man/bernoulli.Rd
scidb/man/build.Rd
scidb/man/dimnames.scidb.Rd
scidb/man/c-methods.Rd
scidb/man/scidblist.Rd
scidb/man/merge-methods.Rd
scidb/man/is.scidbdf.Rd
scidb/man/na.locf-method.Rd
scidb/man/peek.Rd
scidb/man/repart.Rd
scidb/man/slice.Rd
scidb/man/print.scidb.Rd
scidb/man/order.Rd
scidb/man/length.scidb.Rd
scidb/man/summary.scidb.Rd
scidb/man/sweep-methods.Rd
scidb/man/persist.Rd
scidb/man/dist.Rd
scidb/man/reshape-method.Rd
scidb/man/aggregate-methods.Rd
scidb/man/scidb-package.Rd
scidb/man/is.temp.Rd
scidb/man/grand-methods.Rd
scidb/man/lag.Rd
scidb/man/nrow.scidb.Rd
scidb/man/scidbdisconnect.Rd
scidb/man/is.scidb.Rd
scidb/man/rank.Rd
scidb/man/scidbdf-class.Rd
scidb/man/dimension_rename.Rd
scidb/.Rinstignore