sclero: Measure Growth Patterns and Align Sampling Spots in Photographs
Version 0.2

Provides functions to measure growth patterns and align sampling spots in chronologically deposited materials. The package is intended for the fields of sclerochronology, dendrochronology and geology.

AuthorMikko Vihtakari [aut, cre]
Date of publication2016-01-21 19:06:11
MaintainerMikko Vihtakari <mikko.vihtakari@gmail.com>
LicenseGPL-3
Version0.2
URL https://github.com/MikkoVihtakari/sclero
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("sclero")

Popular man pages

assign.size: Assign spot sizes to 'rawDist' objects for estimating spatial...
assign.value: Assign values to 'rawDist' objects for plotting.
barium: Barium to calcium ratios for sample spots in shellspots...
coln: Print the order and names of columns in a data frame
samplemap: Common plotting function for plot.rawDist and plot.spotDist...
sclero: Measure Growth Patterns and Align Sampling Spots in...
shellspots: Coordinates of sample spots and growth lines along a bivalve...
See all...

All man pages Function index File listing

Man pages

assign.size: Assign spot sizes to 'rawDist' objects for estimating spatial...
assign.value: Assign values to 'rawDist' objects for plotting.
barium: Barium to calcium ratios for sample spots in shellspots...
coln: Print the order and names of columns in a data frame
convert.ijdata: Convert IJDATA object to a list of spatstat objects
create.rawDist: Create rawDist data from arbitary coordinates
order.ijdata: Order IJDATA spot sequences and growth lines
plot.rawDist: Plot rawDist object
plot.spotDist: Plot spotDist object
print.spotDist: Print 'spotDist' objects
read.ijdata: Read ImageJ zip file containing several ROI files and extract...
samplemap: Common plotting function for plot.rawDist and plot.spotDist...
sclero: Measure Growth Patterns and Align Sampling Spots in...
shellsizes: Coordinates of sample spots together with spot size...
shellspots: Coordinates of sample spots and growth lines along a bivalve...
spot.dist: Distance of sampling spots from margin along a measurement...

Functions

assign.size Man page Source code
assign.value Man page Source code
barium Man page
coln Man page Source code
convert.ijdata Man page Source code
create.rawDist Man page Source code
order.ijdata Man page Source code
plot.rawDist Man page Source code
plot.spotDist Man page Source code
print.spotDist Man page Source code
read.ijdata Man page Source code
samplemap Man page Source code
sclero Man page
sclero-package Man page
shellsizes Man page
shellspots Man page
spot.dist Man page Source code

Files

inst
inst/extdata
inst/extdata/shellspots.png
inst/extdata/multi_spotseq.zip
inst/extdata/shellspots.zip
inst/doc
inst/doc/sclero_tutorial.R
inst/doc/sclero_tutorial.Rnw
inst/doc/sclero_tutorial.pdf
NAMESPACE
data
data/shellspots.rda
data/barium.rda
data/shellsizes.rda
R
R/read.ijdata.R
R/create.rawDist.R
R/plot.rawDist.R
R/convert.ijdata.R
R/dataset-docs.R
R/assign.size.R
R/assign.value.R
R/sclero-package.R
R/print.spotDist.R
R/plot.spotDist.R
R/order.ijdata.R
R/coln.R
R/samplemap.R
R/spot.dist.R
vignettes
vignettes/roi_manager_size.png
vignettes/oval_selection.png
vignettes/marked_shell.pdf
vignettes/adding_ovals.png
vignettes/spot_alignment.pdf
vignettes/bibliography.bib
vignettes/roi_manager_multi.png
vignettes/sclero_tutorial.Rnw
vignettes/segmented_line.png
vignettes/roi_manager.png
vignettes/principle.pdf
vignettes/multi_point.png
MD5
build
build/vignette.rds
DESCRIPTION
man
man/sclero.Rd
man/plot.rawDist.Rd
man/plot.spotDist.Rd
man/create.rawDist.Rd
man/print.spotDist.Rd
man/read.ijdata.Rd
man/shellsizes.Rd
man/coln.Rd
man/assign.size.Rd
man/shellspots.Rd
man/barium.Rd
man/assign.value.Rd
man/samplemap.Rd
man/spot.dist.Rd
man/order.ijdata.Rd
man/convert.ijdata.Rd
sclero documentation built on May 20, 2017, 3:19 a.m.

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