sclero: Measure Growth Patterns and Align Sampling Spots in Photographs

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Provides functions to measure growth patterns and align sampling spots in chronologically deposited materials. The package is intended for the fields of sclerochronology, dendrochronology and geology.

Author
Mikko Vihtakari [aut, cre]
Date of publication
2016-01-21 19:06:11
Maintainer
Mikko Vihtakari <mikko.vihtakari@gmail.com>
License
GPL-3
Version
0.2
URLs

View on CRAN

Man pages

assign.size
Assign spot sizes to 'rawDist' objects for estimating spatial...
assign.value
Assign values to 'rawDist' objects for plotting.
barium
Barium to calcium ratios for sample spots in shellspots...
coln
Print the order and names of columns in a data frame
convert.ijdata
Convert IJDATA object to a list of spatstat objects
create.rawDist
Create rawDist data from arbitary coordinates
order.ijdata
Order IJDATA spot sequences and growth lines
plot.rawDist
Plot rawDist object
plot.spotDist
Plot spotDist object
print.spotDist
Print 'spotDist' objects
read.ijdata
Read ImageJ zip file containing several ROI files and extract...
samplemap
Common plotting function for plot.rawDist and plot.spotDist...
sclero
Measure Growth Patterns and Align Sampling Spots in...
shellsizes
Coordinates of sample spots together with spot size...
shellspots
Coordinates of sample spots and growth lines along a bivalve...
spot.dist
Distance of sampling spots from margin along a measurement...

Files in this package

sclero
sclero/inst
sclero/inst/extdata
sclero/inst/extdata/shellspots.png
sclero/inst/extdata/multi_spotseq.zip
sclero/inst/extdata/shellspots.zip
sclero/inst/doc
sclero/inst/doc/sclero_tutorial.R
sclero/inst/doc/sclero_tutorial.Rnw
sclero/inst/doc/sclero_tutorial.pdf
sclero/NAMESPACE
sclero/data
sclero/data/shellspots.rda
sclero/data/barium.rda
sclero/data/shellsizes.rda
sclero/R
sclero/R/read.ijdata.R
sclero/R/create.rawDist.R
sclero/R/plot.rawDist.R
sclero/R/convert.ijdata.R
sclero/R/dataset-docs.R
sclero/R/assign.size.R
sclero/R/assign.value.R
sclero/R/sclero-package.R
sclero/R/print.spotDist.R
sclero/R/plot.spotDist.R
sclero/R/order.ijdata.R
sclero/R/coln.R
sclero/R/samplemap.R
sclero/R/spot.dist.R
sclero/vignettes
sclero/vignettes/roi_manager_size.png
sclero/vignettes/oval_selection.png
sclero/vignettes/marked_shell.pdf
sclero/vignettes/adding_ovals.png
sclero/vignettes/spot_alignment.pdf
sclero/vignettes/bibliography.bib
sclero/vignettes/roi_manager_multi.png
sclero/vignettes/sclero_tutorial.Rnw
sclero/vignettes/segmented_line.png
sclero/vignettes/roi_manager.png
sclero/vignettes/principle.pdf
sclero/vignettes/multi_point.png
sclero/MD5
sclero/build
sclero/build/vignette.rds
sclero/DESCRIPTION
sclero/man
sclero/man/sclero.Rd
sclero/man/plot.rawDist.Rd
sclero/man/plot.spotDist.Rd
sclero/man/create.rawDist.Rd
sclero/man/print.spotDist.Rd
sclero/man/read.ijdata.Rd
sclero/man/shellsizes.Rd
sclero/man/coln.Rd
sclero/man/assign.size.Rd
sclero/man/shellspots.Rd
sclero/man/barium.Rd
sclero/man/assign.value.Rd
sclero/man/samplemap.Rd
sclero/man/spot.dist.Rd
sclero/man/order.ijdata.Rd
sclero/man/convert.ijdata.Rd