ExampleDb: Example database

ExampleDbR Documentation

Example database


A small example database subset from Laserson and Vigneault et al, 2014.




A data.frame with the following columns:

  • sequence_id: Sequence identifier

  • sequence_alignment: IMGT-gapped observed sequence.

  • germline_alignment: IMGT-gapped germline sequence.

  • germline_alignment_d_mask: IMGT-gapped germline sequence with N, P and D regions masked.

  • v_call: V region allele assignments.

  • v_call_genotyped: TIgGER corrected V region allele assignment.

  • d_call: D region allele assignments.

  • j_call: J region allele assignments.

  • junction: Junction region sequence.

  • junction_length: Length of the junction region in nucleotides.


  1. Laserson U and Vigneault F, et al. High-resolution antibody dynamics of vaccine-induced immune responses. Proc Natl Acad Sci USA. 2014 111:4928-33.

scoper documentation built on Sept. 22, 2022, 5:07 p.m.