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In scoper: Spectral Clustering-Based Method for Identifying B Cell Clones
scoper-package R Documentation
scoper: Spectral Clustering-Based Method for Identifying B Cell Clones
Description
Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) \Sexpr[results=rd]{tools:::Rd_expr_doi(" 10.1093/bioinformatics/bty235")}. Nouri N and Kleinstein SH (2019) \Sexpr[results=rd]{tools:::Rd_expr_doi(" 10.1101/788620")}. Gupta NT, et al. (2017) \Sexpr[results=rd]{tools:::Rd_expr_doi(" 10.4049/jimmunol.1601850")}.
Author(s)
Maintainer: Susanna Marquez susanna.marquez@yale.edu [contributor]
Authors:
Nima Nouri nima.nouri@yale.edu
Jason Vander Heiden jason.vanderheiden@gmail.com
Steven Kleinstein steven.kleinstein@yale.edu [copyright holder]
Other contributors:
Edel Aron edel.aron@yale.edu [contributor]
Gisela Gabernet gisela.gabernet@yale.edu [contributor]
See Also
Useful links:
scoper documentation built on Oct. 6, 2023, 5:09 p.m.
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| scoper-package | R Documentation |
scoper: Spectral Clustering-Based Method for Identifying B Cell Clones
Description
Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) \Sexpr[results=rd]{tools:::Rd_expr_doi(" 10.1093/bioinformatics/bty235")}. Nouri N and Kleinstein SH (2019) \Sexpr[results=rd]{tools:::Rd_expr_doi(" 10.1101/788620")}. Gupta NT, et al. (2017) \Sexpr[results=rd]{tools:::Rd_expr_doi(" 10.4049/jimmunol.1601850")}.
Author(s)
Maintainer: Susanna Marquez susanna.marquez@yale.edu [contributor]
Authors:
Nima Nouri nima.nouri@yale.edu
Jason Vander Heiden jason.vanderheiden@gmail.com
Steven Kleinstein steven.kleinstein@yale.edu [copyright holder]
Other contributors:
Edel Aron edel.aron@yale.edu [contributor]
Gisela Gabernet gisela.gabernet@yale.edu [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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