plot_regulator_network: Plotting the regulatory table from scregclust as a directed...

In scregclust: Reconstructing the Regulatory Programs of Target Genes in scRNA-Seq Data

Plotting the regulatory table from scregclust as a directed graph

Description

Plotting the regulatory table from scregclust as a directed graph

Usage

plot_regulator_network(
  output,
  arrow_size = 0.3,
  edge_scaling = 30,
  no_links = 6,
  col = c("gray80", "#FC7165", "#BD828C", "#9D8A9F", "#7D92B2", "#BDA88C", "#FCBD65",
    "#F2BB90", "#E7B9BA", "#BDB69C", "#92B27D", "#9B8BA5", "#9D7DB2", "#94A5BF")
)

Arguments

output	Object of type scregclust_output from a fit of the scregclust algorithm.
arrow_size	Size of arrow head
edge_scaling	Scaling factor for edge width
no_links	Threshold value (0-10) for number of edges to show, higher value = more stringent threshold = less edges
col	color

Value

Graph with gene modules and regulators as nodes

scregclust documentation built on April 4, 2025, 3:03 a.m.