scregclust_format: Package data before clustering

In scregclust: Reconstructing the Regulatory Programs of Target Genes in scRNA-Seq Data

Package data before clustering

Description

Package data before clustering

Usage

scregclust_format(expression_matrix, mode = c("TF", "kinase"))

Arguments

expression_matrix	The p x n gene expression matrix with gene symbols as rownames.
mode	Determines which genes are considered to be regulators.

Value

A list with

genesymbols	The gene symbols extracted from the expression matrix
sample_assignment	A vector filled with 1's of the same length as there are columns in the gene expression matrix.
is_regulator	Whether a gene is considered to be a regulator or not, determined dependent on mode.

See Also

get_regulator_list()

scregclust documentation built on April 4, 2025, 3:03 a.m.