sdm: Species Distribution Modelling

An extensible R framework for developing species distribution models using individual and community-based approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time.

AuthorBabak Naimi, Miguel B. Araujo
Date of publication2016-12-02 23:13:39
MaintainerBabak Naimi <naimi.b@gmail.com>
LicenseGPL (>= 3)
Version1.0-32
http://biogeoinformatics.org

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Files in this package

sdm
sdm/inst
sdm/inst/shinyApps
sdm/inst/shinyApps/css.rds
sdm/inst/shinyApps/sdmgui
sdm/inst/shinyApps/sdmgui/ui.R
sdm/inst/shinyApps/sdmgui/server.R
sdm/inst/shinyApps/sdmgui/www
sdm/inst/shinyApps/sdmgui/www/bootstrap.min.css
sdm/inst/shinyApps/sdmgui/www/sdm_design.png
sdm/inst/CITATION
sdm/inst/methods
sdm/inst/methods/sdm
sdm/inst/methods/sdm/rpart.R
sdm/inst/methods/sdm/maxent.R
sdm/inst/methods/sdm/glm.R
sdm/inst/methods/sdm/glmnet.R
sdm/inst/methods/sdm/brt.R
sdm/inst/methods/sdm/gam.R
sdm/inst/methods/sdm/mda.R
sdm/inst/methods/sdm/mars.R
sdm/inst/methods/sdm/bioclim.R
sdm/inst/methods/sdm/maxlike.R
sdm/inst/methods/sdm/rf.R
sdm/inst/methods/sdm/svm.R
sdm/inst/methods/sdm/bioclimDismo.R
sdm/inst/methods/sdm/fda.R
sdm/inst/methods/sdm/cart.R
sdm/inst/test
sdm/inst/test/pca.R
sdm/inst/test/sdmgui.R
sdm/inst/doc
sdm/inst/doc/quick_sdm.Rmd
sdm/inst/doc/quick_sdm.html
sdm/inst/external
sdm/inst/external/predictors.grd
sdm/inst/external/species.shp
sdm/inst/external/temperature.asc
sdm/inst/external/model.sdm
sdm/inst/external/po_spatial_points.shx
sdm/inst/external/po_spatial_points.dbf
sdm/inst/external/vegetation.asc
sdm/inst/external/po_spatial_points.shp
sdm/inst/external/pa_spatial_points.shx
sdm/inst/external/precipitation.asc
sdm/inst/external/species.prj
sdm/inst/external/pa_spatial_points.dbf
sdm/inst/external/pa_df.csv
sdm/inst/external/species.shx
sdm/inst/external/po_xy.shp
sdm/inst/external/multi_pa_df.csv
sdm/inst/external/pa_df_with_xy.csv
sdm/inst/external/predictors.gri
sdm/inst/external/species.dbf
sdm/inst/external/elevation.asc
sdm/inst/external/data.sdd
sdm/inst/external/pa_spatial_points.shp
sdm/NAMESPACE
sdm/R
sdm/R/sdmMethods.R sdm/R/varImp.R sdm/R/write.R sdm/R/sdmFormula.R sdm/R/subset.R sdm/R/replicate.R sdm/R/modelFrame.R sdm/R/plot.R sdm/R/maxent.R sdm/R/predict.R sdm/R/show.R sdm/R/methods.R sdm/R/density.R sdm/R/coordinates.R sdm/R/bioclim.R sdm/R/gui.R sdm/R/calibration.R sdm/R/maxlike.R sdm/R/ensemble.R sdm/R/names.R sdm/R/evaluates.R sdm/R/roc.R sdm/R/getData.R sdm/R/isntallAll.R sdm/R/AAAClasses.R sdm/R/sdm.R sdm/R/sdmData.R sdm/R/zzz.R
sdm/vignettes
sdm/vignettes/quick_sdm.Rmd
sdm/MD5
sdm/build
sdm/build/vignette.rds
sdm/DESCRIPTION
sdm/man
sdm/man/add.Rd sdm/man/names.Rd sdm/man/as.data.frame.Rd sdm/man/varImportance.Rd sdm/man/installAll.Rd sdm/man/getModelInfo.Rd sdm/man/calibration.Rd sdm/man/gui.Rd sdm/man/sdmdata-class.Rd sdm/man/sdm.Rd sdm/man/predict.Rd sdm/man/read.sdm.Rd sdm/man/sdmData.Rd sdm/man/sdmSetting.Rd sdm/man/coordinates.Rd sdm/man/sdmCorrelativeMethod-class.Rd sdm/man/boxplot.Rd sdm/man/sdmModel-class.Rd sdm/man/ensemble.Rd sdm/man/featuresFrame-class.Rd sdm/man/roc.Rd sdm/man/extractIndex.Rd sdm/man/subset.Rd sdm/man/density.Rd sdm/man/evaluates.Rd

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