API for sdm
Species Distribution Modelling

Global functions
CRSorNULL-class	Man page
D	Source code
D2	Source code
Extract	Source code
Jackard	Source code
[,sdmdata,ANY,ANY-method	Man page
[,sdmdata,missing,missing-method	Man page
[[,sdmModels,ANY,ANY-method	Man page
add	Man page
add,list,character-method	Man page
addLHSformula	Source code
addMethods	Source code
agrep	Source code
apply	Source code
as.data.frame	Man page
as.data.frame,sdmdata-method	Man page
auc	Source code
bin	Source code
bioclimDismo	Source code
bioclimFit	Source code
boxplot	Man page
boxplot,sdmEvaluate-method	Man page
calibration	Man page
calibration,sdmEvaluate,missing-method	Man page
calibration,vector,vector-method	Man page
char2time	Source code
charVector2List	Source code
characterORmissing-class	Man page
characterORnull-class	Man page
checkFactor	Source code
cmx	Source code
colNumber	Source code
coordinates	Man page
coordinates,sdmModels-method	Man page
coordinates,sdmdata-method	Man page
coordinates<-	Man page
coordinates<-,sdmdata-method	Man page
cor	Source code
create.sdmCorrelativeMethod	Source code
createSdmdata	Source code
cutx	Source code
data.frameORnull-class	Man page
dataClean	Source code
deleteRecords	Source code
density	Man page
density,sdmEvaluate-method	Man page
detachPackage	Source code
deviance_binomial	Source code
deviance_gaussian	Source code
deviance_laplace	Source code
deviance_poisson	Source code
domClass	Source code
ensemble	Man page
ensemble,sdmModels,Raster-method	Man page
ensemble,sdmModels-method	Man page
environmentORnull-class	Man page
eqFactLevel	Source code
evaluate.binomial	Source code
evaluate.cmx	Source code
evaluate.numerical	Source code
evaluates	Man page
evaluates,vector,vector-method	Man page
exCoords	Source code
exFormula	Source code
exFunc	Source code
exGroup	Source code
exInfo	Source code
exProduct	Source code
exTime	Source code
excludeVector	Source code
expressionORnull-class	Man page
extractEvaluation	Source code
factorFix	Source code
factorFix.bm	Source code
factorFixW	Source code
feLapply	Source code
featuresFrame-class	Man page
fit	Source code
fitLapply	Source code
fitSimpleLapply	Source code
fit_and_1eval	Source code
fit_and_2evals_dep	Source code
fit_and_2evals_indep	Source code
fit_and_3evals	Source code
fitlapply	Source code
fixFormula	Source code
formulaORnull-class	Man page
functionORcharacter-class	Man page
functionORnull-class	Man page
gauss	Source code
generateName	Source code
generateWL	Source code
generateWLP	Source code
getData.sdmMatrix	Source code
getData.sdmY	Source code
getDataFame	Source code
getEvalTable	Source code
getEvalThresholds	Source code
getEvaluation	Man page
getEvaluation,sdmModels-method	Man page
getFeature	Source code
getFeature.cubic	Source code
getFeature.hinge	Source code
getFeature.linear	Source code
getFeature.poly	Source code
getFeature.product	Source code
getFeature.quad	Source code
getFeature.threshold	Source code
getFeatureNamesTypes	Source code
getFeatureRecords	Source code
getFeaturetype	Source code
getFormula	Source code
getFormula.gammgcv	Source code
getFormula.gammgcv.rhs	Source code
getFormula.rhs	Source code
getGroupIndex	Source code
getGroupLevels	Source code
getGroupNames	Source code
getHingeParams	Source code
getIndex	Source code
getModel.info	Source code
getModel.info2	Source code
getModelFrame	Source code
getModelInfo	Man page
getModelInfo,sdmModels-method	Man page
getPackageList	Source code
getPerformance	Source code
getRecordID	Source code
getRhsFromFormula	Source code
getRoc	Man page Source code
getRoc,sdmModels,ANY-method	Man page
getRoc,vector,vector-method	Man page
getRunID	Source code
getRunTaskTable	Source code
getSdmDataFrame	Source code
getSingleFeatureFrame	Source code
getSpecies	Source code
getSpeciesDF	Source code
getSpeciesDistribution	Source code
getSpeciesIndex	Source code
getSpeciesNames	Source code
getSpeciesRecords	Source code
getThresholdParams	Source code
getTimeIndex	Source code
getTotal.object.size	Source code
getVarImp	Man page
getVarImp,sdmModels-method	Man page
getVarImpObject	Source code
getlevels	Source code
getmethod	Man page
getmethod,character-method	Man page
getmethodNames	Man page
getmethodNames,ANY-method	Man page
gui	Man page
gui,sdmModels-method	Man page
gui.sdm	Source code
hinge	Source code
hingeNull_binomial	Source code
installAll	Man page
installAll,ANY-method	Man page
listORcharacter-class	Man page
listORnull-class	Man page
loadLib	Source code
mae	Source code
mahal	Source code
matrixORnull-class	Man page
maxent	Source code
maxlike	Source code
memory_used	Source code
methodFix	Source code
movEnv	Source code
movEnv2sdm	Source code
names	Man page
names,sdmdata-method	Man page
names<-	Man page
names<-,sdmdata-method	Man page
nested_terms	Source code
newFormulaFunction	Source code
newGroup	Source code
newMetadata	Source code
newMethod	Source code
newgroup	Source code
normalize	Source code
nt.to.numeric	Source code
numericORnull-class	Man page
nvhinge	Source code
nvthresh	Source code
occurrence	Source code
onAttach	Source code
onUnload	Source code
parLapply	Source code
pkgLoad	Source code
plot.roc	Source code
pmatch	Source code
pmatch2	Source code
predict	Man page
predict,.maxlikeModel-method	Man page
predict,sdmModels-method	Man page
pseudo	Source code
pseudo_eDist	Source code
pseudo_eRandom	Source code
pseudo_gDist	Source code
pseudo_gRandom	Source code
raster2df	Source code
read.sdm	Man page
read.sdm,character-method	Man page
replicate.methodFix	Source code
rmse	Source code
roc	Man page Source code
roc,sdmModels,ANY-method	Man page
roc,sdmModels-method	Man page
roc,vector,vector-method	Man page
s.installed	Source code
s.windows	Source code
sBinomial	Source code
sdm	Man page
sdm,ANY,sdmdata,.sdmCorSetting-method	Man page
sdm,ANY,sdmdata,character-method	Man page
sdm,sdmdata,.sdmCorSetting,ANY-method	Man page
sdmCorrelativeMethod-class	Man page
sdmData	Man page
sdmData,ANY,SpatialPoints,ANY,Raster-method	Man page
sdmData,ANY,SpatialPoints,ANY,missing-method	Man page
sdmData,ANY,data.frame,ANY,missing-method	Man page
sdmData,ANY,data.frame,missing,missing-method	Man page
sdmData,data.frame,formula,ANY,missing-method	Man page
sdmData,data.frame,missing,ANY,missing-method	Man page
sdmEvaluate-class	Man page
sdmFormula-class	Man page
sdmModels-class	Man page
sdmSetting	Man page
sdmSetting,ANY,sdmdata,character-method	Man page
sdmdata-class	Man page
select.terms	Source code
show,sdmModels-method	Man page
show,sdmSetting-method	Man page
show,sdmdata-method	Man page
speciesDetect	Source code
speciesType	Source code
split.formula	Source code
statFix	Source code
subset	Man page
subset,sdmModels-method	Man page
subsetRecords	Source code
templateMatch	Source code
term	Source code
thresh	Source code
threshold	Source code
trim	Source code
update.sdmCorrelativeMethod	Source code
updateGroup	Source code
varExist	Source code
varImp	Source code
wellP	Source code
where	Source code
which.is.coords	Source code
write.sdm	Man page
write.sdm,.sdmCorSetting,character-method	Man page
write.sdm,sdmModels,character-method	Man page
write.sdm,sdmdata,character-method	Man page