sdm
Species Distribution Modelling

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293
Source code
56
Man pages
28
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sdm: Species Distribution Modelling
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API

API for sdm
Species Distribution Modelling

Global functions
+,sdmModels,sdmModels-method Man page
.Extract Source code
.Jackard Source code
.LD Source code
.LD2 Source code
.Lapply Source code
._getPerformance Source code
._varImp Source code
.addLHSformula Source code
.addMethods Source code
.agrep Source code
.auc Source code
.bin Source code
.bioclimDismo Source code
.bioclimFit Source code
.char2time Source code
.charVector2List Source code
.checkFactor Source code
.cmx Source code
.colNumber Source code
.combineModels Source code
.combineSdmData Source code
.cor Source code
.create.sdmCorrelativeMethod Source code
.createSdmdata Source code
.cutx Source code
.dataClean Source code
.deleteRecords Source code
.detachPackage Source code
.deviance_binomial Source code
.deviance_gaussian Source code
.deviance_laplace Source code
.deviance_poisson Source code
.domClass Source code
.domainDismo Source code
.ent Source code
.eqFactLevel Source code
.eval Source code
.evaluate.binomial Source code
.evaluate.cmx Source code
.evaluate.numerical Source code
.exCoords Source code
.exFormula Source code
.exFunc Source code
.exGroup Source code
.exInfo Source code
.exProduct Source code
.exTime Source code
.excludeVector Source code
.extractEvaluation Source code
.factorFix Source code
.factorFix.bm Source code
.factorFixW Source code
.factorFreq Source code
.feLapply Source code
.fit Source code
.fitLapply Source code
.fitSimpleLapply Source code
.fit_and_1eval Source code
.fit_and_2evals_indep Source code
.fit_and_3evals Source code
.fitlapply Source code
.fixFormula Source code
.gauss Source code
.generateName Source code
.generateWL Source code
.generateWLP Source code
.getData.sdmMatrix Source code
.getData.sdmY Source code
.getDataFame Source code
.getEnvSpace Source code
.getEvalTable Source code
.getEvalThresholds Source code
.getFeature Source code
.getFeature.cubic Source code
.getFeature.hinge Source code
.getFeature.linear Source code
.getFeature.poly Source code
.getFeature.product Source code
.getFeature.quad Source code
.getFeature.threshold Source code
.getFeatureNamesTypes Source code
.getFeatureRecords Source code
.getFeaturetype Source code
.getFormula Source code
.getFormula.gammgcv Source code
.getFormula.gammgcv.rhs Source code
.getFormula.rhs Source code
.getGroupIndex Source code
.getGroupLevels Source code
.getGroupNames Source code
.getHingeParams Source code
.getIndex Source code
.getModel.info Source code
.getModel.info2 Source code
.getModelFrame Source code
.getNicheRaster Source code
.getPackageGitHubList Source code
.getPackageList Source code
.getRecordID Source code
.getRhsFromFormula Source code
.getRoc Source code
.getRunID Source code
.getRunTaskTable Source code
.getSdmDataFrame Source code
.getSingleFeatureFrame Source code
.getSpecies Source code
.getSpeciesDF Source code
.getSpeciesDistribution Source code
.getSpeciesIndex Source code
.getSpeciesNames Source code
.getSpeciesRecords Source code
.getThresholdParams Source code
.getTimeIndex Source code
.getTotal.object.size Source code
.getVarImpObject Source code
.getWeights Source code
.getlevels Source code
.gui.sdm Source code
.hinge Source code
.hingeNull_binomial Source code
.identicalContent Source code
.int.to.numeric Source code
.invhinge Source code
.invthresh Source code
.is.installed Source code
.is.windows Source code
.isBinomial Source code
.loadLib Source code
.mae Source code
.mahal Source code
.mahalDismo Source code
.maxent Source code
.maxlike Source code
.methodFix Source code
.movEnv Source code
.movEnv2sdm Source code
.nested_terms Source code
.newFormulaFunction Source code
.newGroup Source code
.newMetadata Source code
.newMethod Source code
.newgroup Source code
.nicheSpace Source code
.normalize Source code
.occurrence Source code
.onAttach Source code
.onUnload Source code
.parLapply Source code
.pkgLoad Source code
.plot.roc Source code
.pmatch Source code
.pmatch2 Source code
.pseudo Source code
.pseudo_eDist Source code
.pseudo_eRandom Source code
.pseudo_gDist Source code
.pseudo_gRandom Source code
.raster2df Source code
.replicate.methodFix Source code
.require Source code
.responseCurve Source code
.responseCurve1 Source code
.rmse Source code
.roc Source code
.select.terms Source code
.speciesDetect Source code
.speciesType Source code
.split.formula Source code
.statFix Source code
.subsetRecords Source code
.templateMatch Source code
.term Source code
.thresh Source code
.threshold Source code
.trim Source code
.update.sdmCorrelativeMethod Source code
.updateGroup Source code
.varExist Source code
.wellP Source code
.where Source code
.which.is.coords Source code
Arith-methods Man page
CRSorNULL-class Man page
[,sdmdata,ANY,ANY-method Man page
[,sdmdata,missing,missing-method Man page
[[,sdmModels,ANY,ANY-method Man page
add Man page
add,list,character-method Man page
as.data.frame Man page
as.data.frame,sdmdata-method Man page
boxplot Man page
boxplot,sdmEvaluate-method Man page
calibration Man page
calibration,sdmEvaluate,missing-method Man page
calibration,vector,vector-method Man page
characterORmissing-class Man page
characterORnull-class Man page
coordinates Man page
coordinates,sdmModels-method Man page
coordinates,sdmdata-method Man page
coordinates<- Man page
coordinates<-,sdmdata-method Man page
data.frameORnull-class Man page
density Man page
density,sdmEvaluate-method Man page
ensemble Man page
ensemble,sdmModels,Raster-method Man page
ensemble,sdmModels,data.frame-method Man page
ensemble,sdmModels-method Man page
environmentORnull-class Man page
evaluates Man page
evaluates,vector,vector-method Man page
expressionORnull-class Man page
featuresFrame-class Man page
formulaORnull-class Man page
functionORcharacter-class Man page
functionORnull-class Man page
getEvaluation Man page
getEvaluation,sdmModels-method Man page
getModelId Man page
getModelId,sdmModels-method Man page
getModelInfo Man page
getModelInfo,sdmModels-method Man page
getResponseCurve Man page
getResponseCurve,sdmModels-method Man page
getRoc Man page
getRoc,sdmModels,ANY-method Man page
getRoc,vector,vector-method Man page
getVarImp Man page
getVarImp,sdmModels-method Man page
getmethod Man page
getmethod,character-method Man page
getmethodNames Man page
getmethodNames,ANY-method Man page
gui Man page
gui,sdmModels-method Man page
installAll Man page
installAll,ANY-method Man page
listORcharacter-class Man page
listORnull-class Man page
matrixORnull-class Man page
names Man page
names,sdmdata-method Man page
names<- Man page
names<-,sdmdata-method Man page
niche Man page
niche,RasterStackBrick,RasterLayer-method Man page
niche,RasterStackBrick,SpatialPoints-method Man page
niche,RasterStackBrick,sdmdata-method Man page
niche,sdmdata,ANY-method Man page
numericORnull-class Man page
plot,.nicheRaster-method Man page
plot,.responseCurve-method Man page
predict Man page
predict,.maxlikeModel-method Man page
predict,sdmModels-method Man page
rcurve Man page
rcurve,.responseCurve-method Man page
rcurve,sdmModels-method Man page
read.sdm Man page
read.sdm,character-method Man page
roc Man page
roc,sdmModels,ANY-method Man page
roc,sdmModels-method Man page
roc,vector,vector-method Man page
sdm Man page
sdm,ANY,sdmdata,.sdmCorSetting-method Man page
sdm,ANY,sdmdata,character-method Man page
sdm,sdmdata,.sdmCorSetting,ANY-method Man page
sdmCorrelativeMethod-class Man page
sdmData Man page
sdmData,ANY,SpatialPoints,ANY,Raster-method Man page
sdmData,ANY,SpatialPoints,ANY,missing-method Man page
sdmData,ANY,data.frame,ANY,missing-method Man page
sdmData,ANY,data.frame,missing,missing-method Man page
sdmData,data.frame,formula,ANY,missing-method Man page
sdmData,data.frame,missing,ANY,missing-method Man page
sdmEvaluate-class Man page
sdmFormula-class Man page
sdmModels-class Man page
sdmSetting Man page
sdmSetting,ANY,sdmdata,character-method Man page
sdmdata-class Man page
show,sdmModels-method Man page
show,sdmSetting-method Man page
show,sdmdata-method Man page
subset Man page
subset,sdmModels-method Man page
write.sdm Man page
write.sdm,.sdmCorSetting,character-method Man page
write.sdm,sdmModels,character-method Man page
write.sdm,sdmdata,character-method Man page
sdm documentation built on April 30, 2020, 1:04 a.m.

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