Files in selac
Selection Models for Amino Acid and/or Codon Evolution
MD5
README.md
NAMESPACE
DESCRIPTION
data/yeast.rda
data/archosaurs.rda
data/non_zero_pos.rda
R/selon.R
R/modelAdequacy.R
R/plot.R
R/selacSim.R
R/selac.R
R/nzp.R
R/marginalRecon.R
man/NucSimulator.Rd
man/GetAdequateManyReps.Rd
man/PlotMutationFitnessSpectra.Rd
man/SelacSimulator.Rd
man/SelonOptimize.Rd
man/archosaur.Rd
man/internal.Rd
man/GetMarginalAllGenes.Rd
man/SelonSimulator.Rd
man/SelonHMMOptimize.Rd
man/PlotGeneSiteInfo.Rd
man/SelacHMMSimulator.Rd
man/PlotPerAAFitness.Rd
man/PlotEquilbriumCodonDistribution.Rd
man/GetPartitionOrder.Rd
man/SelacSimulatorEvolvingRates.Rd
man/GetSelacPhiCat.Rd
man/PlotExpectedFitness.Rd
man/GetSelacSiteLikelihoods.Rd
man/SelacOptimize.Rd
man/non_zero_pos.Rd
man/SelacHMMOptimize.Rd
man/yeast.Rd
man/GetFunctionality.Rd
man/GetAdequateSelac.Rd
tests/testthat.R
tests/testthat/test_utility.R
tests/testthat/rokasYeast.tre
tests/testthat/gene1Yeast.fasta
tests/testthat/test_likelihood.R
inst/extdata/rokasYeast.tre
inst/extdata/gene1Yeast.fasta
