Locus: The Locus class

Description Details Slots Author(s)

Description

This is a S4 Locus classs for a marker (e.g., SNP) locus.

Details

This Locus class abstracts the information for a marker or SNP locus. It consists of six slots, as follows.

Slots

Name:

A character string as the name of this marker locus.

Chromosome:

A character string as the name of the chromosome for this marker.

Position:

A numeric number as the chromosomal position of this marker.

Maf:

A numeric number for the minor allele frquency at this locus.

Type:

A character specifying the type of this locus, which can be "A", "B", or "C". The default value is "C" when the input is missing.

Status:

A integer specifying the status of tihs locus, wihch can be 1 for obligatory markers or 0 otherwise. The default value is 0 when missing the input.

Author(s)

Nick X-L Wu


selectSNPs documentation built on Feb. 28, 2020, 5:08 p.m.