plotMap-methods: Plotting a Map object.

In selectSNPs: Optimal Selection of SNPs Using a Unified Local Function

Description

This S4 generic function is used to plot a Map object. The Map object needs to have at leaset three slots: Marker names (Name), Chromosome, and Position.

Usage

plotMap(object, ...)

## S4 method for signature 'Map'
plotMap(object, plotMaf = FALSE, bin = 1e+06, maf.base = 0.3)

Arguments

object	An input Map object.
...	Some extra input parameter values; optional.
plotMaf	A logical value. If TRUE, MAF density will be plotted; otherwise, SNPs are plotted based on their map positions. plotted based on their chromosomal po
bin	Length of the bin in which SNPs are counted. The default length is 1M bp.
maf.base	The baseline MAF, which by default is 0.3. A MAF density above maf.base is trucated to be 1.

Value

None.

Author(s)

Nick X-L Wu

selectSNPs documentation built on Feb. 28, 2020, 5:08 p.m.