tests/testthat/test-add_rsq.R

In semptools: Customizing Structural Equation Modelling Plots

library(lavaan)
library(semPlot)

mod_pa <-
  'x1 ~~ x2
   x3 ~  x1 + x2
   x4 ~  x1 + x3
  '
fit_pa <- lavaan::sem(mod_pa, pa_example)
m <- matrix(c("x1",   NA,  NA,   NA,
              NA, "x3",  NA, "x4",
              "x2",   NA,  NA,   NA), byrow = TRUE, 3, 4)
p_pa <- semPaths(fit_pa, whatLabels = "est",
                 sizeMan = 10,
                 edge.label.cex = 1.15,
                 layout = m,
                 DoNotPlot = TRUE)

est <- parameterEstimates(fit_pa)
id <- c(1, 2, 3, 4, 5, 6, 7, 8, 9, 1)
p_pa_est_chk <- formatC(est$est[id], digits = 2, format = "f")
rsq <- parameterEstimates(fit_pa, rsquare = TRUE)
p_pa_est_chk[c(6, 7)] <- paste0("R2=",
                                formatC(rsq[c(10, 11), "est"], digits = 2, format = "f"))
p_pa_est_chk2 <- p_pa_est_chk
p_pa_est_chk2[c(6, 7)] <- paste0("Rsq:",
                                 formatC(rsq[c(10, 11), "est"], digits = 2, format = "f"))

p_std <- semPaths(fit_pa, whatLabels = "std",
                  sizeMan = 10,
                  edge.label.cex = 1.15,
                  layout = m,
                  DoNotPlot = TRUE)
std <- standardizedSolution(fit_pa)
id <- c(1, 2, 3, 4, 5, 6, 7, 8, 9, 1)
p_pa_std_chk <- formatC(std$est.std[id], digits = 2, format = "f")
rsq <- parameterEstimates(fit_pa, rsquare = TRUE)
p_pa_std_chk[c(6, 7)] <- paste0("R2=",
                                formatC(rsq[c(10, 11), "est"], digits = 2, format = "f"))

test_that(
  "add_rsq", {
    p_rsq <- add_rsq(p_pa, fit_pa)
    p_rsq2 <- add_rsq(p_pa, fit_pa, rsq_string = "Rsq:")
    p_rsq3 <- add_rsq(p_pa, ests = parameterEstimates(fit_pa, rsquare = TRUE,
                                                      se = FALSE))
    expect_identical(p_rsq$graphAttributes$Edges$labels,
                     p_pa_est_chk)
    expect_identical(p_rsq2$graphAttributes$Edges$labels,
                     p_pa_est_chk2)
    expect_identical(p_rsq3$graphAttributes$Edges$labels,
                     p_pa_est_chk)
    p_rsq_std <- add_rsq(p_std, fit_pa)
    p_rsq_std2 <- add_rsq(p_std, ests = parameterEstimates(fit_pa, rsquare = TRUE,
                                                           se = FALSE))
    expect_identical(p_rsq_std$graphAttributes$Edges$labels,
                     p_pa_std_chk)
    expect_identical(p_rsq_std2$graphAttributes$Edges$labels,
                     p_pa_std_chk)
  })