prettyseq: Text representation of a sequence from an ACNUC server

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/prettyseq.R

Description

To get a text representation of sequence of rank num and of its subsequences, with bpl bases per line (default = 60), and with optional translation of protein-coding subsequences

Usage

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prettyseq(num, bpl = 60, translate = TRUE, socket = autosocket())

Arguments

num

rank of the sequence in the ACNUC database

bpl

number of base per line

translate

should coding sequences be translated?

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

An invisible vector of string. The output is redirected to the console.

Author(s)

J.R. Lobry

References

http://doua.prabi.fr/databases/acnuc.html

citation("seqinr")

See Also

choosebank, query

Examples

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## Not run:  
  ### Need internet connection
  choosebank("emblTP")
  prettyseq(111)
  
## End(Not run)

seqinr documentation built on June 9, 2021, 9:06 a.m.