synsequence: Random synonymous coding sequence generation

In seqinr: Biological Sequences Retrieval and Analysis

Random synonymous coding sequence generation

Description

Generates a random synonymous coding sequence, according to a certain codon usage bias

Usage

synsequence(sequence, numcode = 1, ucoweight = NULL)

Arguments

sequence	A nucleic acids sequence
numcode	The genetic code number as in translate
ucoweight	A list of weights containing the desired codon usage bias as generated by ucoweight

Value

a sequence translating to the same protein sequence as the original one (cf. translate), but containing synonymous codons

Author(s)

L. Palmeira

References

citation("seqinr")

See Also

ucoweight

Examples

  data(ec999)
  sequence=ec999[1][[1]]
  synsequence(sequence,1,ucoweight(sequence))

seqinr documentation built on April 6, 2023, 1:10 a.m.