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seqmagick: Sequence Manipulation Utilities
Tools for reading and writing biological sequences in multiple formats, including 'FASTA', 'PHYLIP', 'CLUSTAL', 'STOCKHOLM', 'MEGA' and 'GenBank'. Supports interleaved and sequential layouts where applicable, converts between formats, and manipulates sequence sets (e.g., filtering by patterns and computing consensus sequences from alignments). Also includes functions to download nucleotide records from NCBI by accession.
Getting started
Browse package contents
Package details |
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| Author | Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>) |
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| License | Artistic-2.0 |
| Version | 0.1.8 |
| URL | https://github.com/YuLab-SMU/seqmagick |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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