fa_combine: fa_combine

In seqmagick: Sequence Manipulation Utilities

fa_combine

Description

combine 2 fasta files into 1

Usage

fa_combine(file1, file2, outfile = NULL, type = "interleaved")

Arguments

file1	fasta file 1
file2	fasta file 2
outfile	output file
type	one of interleaved and sequential

Value

BStringSet

Author(s)

Guangchuang Yu

Examples

fa_file <- system.file("extdata/HA.fas", package="seqmagick")
x <- fa_read(fa_file)
fa1 <- tempfile(fileext=".fa")
fa2 <- tempfile(fileext=".fa")
fa_write(x[1:5], fa1)
fa_write(x[6:10], fa2)
fa_combine(fa1, fa2)

seqmagick documentation built on July 9, 2023, 7:36 p.m.