fas2phy: fas2phy
In seqmagick: Sequence Manipulation Utilities
fas2phy R Documentation
fas2phy
Description
convert fasta (aligned sequences) to phylip format
Usage
fas2phy(fasfile, outfile = "out.phy", type = "sequential")
Arguments
fasfile
aligned sequences in fasta format
outfile
output file
type
one of interleaved and sequential
Value
None
Author(s)
Guangchuang Yu
fa_file <- system.file("extdata/HA.fas", package="seqmagick")
phy_file <- tempfile(fileext = ".phy")
fas2phy(fa_file, phy_file)
seqmagick documentation built on July 9, 2023, 7:36 p.m.
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| fas2phy | R Documentation |
fas2phy
Description
convert fasta (aligned sequences) to phylip format
Usage
fas2phy(fasfile, outfile = "out.phy", type = "sequential")
Arguments
fasfile |
aligned sequences in fasta format |
outfile |
output file |
type |
one of interleaved and sequential |
Value
None
Author(s)
Guangchuang Yu fa_file <- system.file("extdata/HA.fas", package="seqmagick") phy_file <- tempfile(fileext = ".phy") fas2phy(fa_file, phy_file)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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