# seriation: Infrastructure for Ordering Objects Using Seriation

Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).

- Author
- Michael Hahsler [aut, cre, cph], Christian Buchta [aut, cph], Kurt Hornik [aut, cph], Fionn Murtagh [ctb, cph], Michael Brusco [ctb, cph], Stephanie Stahl [ctb, cph], Hans-Friedrich Koehn [ctb, cph]
- Date of publication
- 2016-08-07 16:00:55
- Maintainer
- Michael Hahsler <mhahsler@lyle.smu.edu>
- License
- GPL-3
- Version
- 1.2-1
- URLs

## Man pages

- bertinplot
- Plot a Bertin Matrix
- Chameleon
- 2D Data Sets used for the CHAMELEON Clustering Algorithm
- col
- Different Useful Color Palettes
- criterion
- Criterion for a Loss/Merit Function for Data Given a...
- criterion_methods
- Registry for Criterion Methods
- data
- Create Simulated Data for Seriation Evaluation
- dissimilarity
- Dissimilarities and Correlations Between Seriation Orders
- dissplot
- Dissimilarity Plot
- get_order
- Extracting Order Information from a Permutation Object
- hmap
- Plot Heat Map Reordered Using Seriation
- Irish
- Irish Referendum Data Set
- Munsingen
- Hodson's Munsingen Data Set
- permutation
- Class ser_permutation - A Collection of Permutation Vectors...
- permutation_matrix
- Conversion Between Permutation Vector and Permutation Matrix
- permutation_vector
- Class ser_permutation_vector - A Single Permutation Vector...
- permute
- Permute the Order in Various Objects
- pimage
- Permutation Image Plot
- Psych24
- Results of 24 Psychological Test for 8th Grade Students
- register_DendSer
- Register Seriation Methods from Package DendSer
- register_GA
- Register a Genetic Algorithm Seriation Method
- reorder_hclust
- Reorder Dendrograms using Optimal Leaf Ordering
- robinson
- Create and Recognize Robinson and Pre-Robinson Matrices
- seriate
- Seriate Dissimilarity Matrices, Matrices or Arrays
- seriation_methods
- Registry for Seriation Methods
- Townships
- Bertin's Characteristics of Townships
- VAT
- Visual Analysis for Cluster Tendency Assessment (VAT/iVAT)
- Wood
- Gene Expression Data for Wood Formation in Poplar Trees
- Zoo
- Zoo Data Set