Wood: Gene Expression Data for Wood Formation in Poplar Trees
In seriation: Infrastructure for Ordering Objects Using Seriation
Wood R Documentation
Gene Expression Data for Wood Formation in Poplar Trees
Description
A data matrix containing a sample of the normalized gene expression data for
6 locations in the stem of Popla trees published in the study by Herzberg et
al (2001). The sample of 136 genes selected by Caraux and Pinloche (2005).
Format
The format is a 136 x 6 matrix.
Source
The data was obtained from
http://www.atgc-montpellier.fr/permutmatrix/manual/Exemples/Wood/Wood.htm.
References
Hertzberg M., H. Aspeborg, J. Schrader, A. Andersson,
R.Erlandsson, K. Blomqvist, R. Bhalerao, M. Uhlen, T. T. Teeri, J.
Lundeberg, Bjoern Sundberg, P. Nilsson and Goeran Sandberg (2001): A
transcriptional roadmap to wood formation, PNAS, 98(25),
14732–14737.
Caraux G. and Pinloche S. (2005): PermutMatrix: a graphical environment to
arrange gene expression profiles in optimal linear order,
Bioinformatics, 21(7) 1280–1281.
Examples
data(Wood)
head(Wood)
seriation documentation built on Nov. 27, 2023, 1:07 a.m.
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| Wood | R Documentation |
Gene Expression Data for Wood Formation in Poplar Trees
Description
A data matrix containing a sample of the normalized gene expression data for 6 locations in the stem of Popla trees published in the study by Herzberg et al (2001). The sample of 136 genes selected by Caraux and Pinloche (2005).
Format
The format is a 136 x 6 matrix.
Source
The data was obtained from http://www.atgc-montpellier.fr/permutmatrix/manual/Exemples/Wood/Wood.htm.
References
Hertzberg M., H. Aspeborg, J. Schrader, A. Andersson, R.Erlandsson, K. Blomqvist, R. Bhalerao, M. Uhlen, T. T. Teeri, J. Lundeberg, Bjoern Sundberg, P. Nilsson and Goeran Sandberg (2001): A transcriptional roadmap to wood formation, PNAS, 98(25), 14732–14737.
Caraux G. and Pinloche S. (2005): PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order, Bioinformatics, 21(7) 1280–1281.
Examples
data(Wood)
head(Wood)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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