API for seriation
Infrastructure for Ordering Objects Using Seriation
| Global functions | |
|---|---|
| .A_2SUM | Source code |
| .A_LS | Source code |
| .add_rev | Source code |
| .alignment | Source code |
| .aprd | Source code |
| .ar | Source code |
| .arrange_dissimilarity_matrix | Source code |
| .average_tri | Source code |
| .check_dist_perm | Source code |
| .check_matrix_perm | Source code |
| .cluster_dissimilarity | Source code |
| .criterion_array_helper | Source code |
| .dist_hamming | Source code |
| .do_rev | Source code |
| .find_best | Source code |
| .find_best_max | Source code |
| .get_parameters | Source code |
| .gg_diverge_pal | Source code |
| .gg_logical_pal | Source code |
| .gg_sequential_pal | Source code |
| .ggpimage_empty | Source code |
| .grid_barplot_horiz | Source code |
| .grid_basic_layout | Source code |
| .grid_basic_layout_with_colorkey | Source code |
| .grid_colorkey | Source code |
| .grid_image | Source code |
| .hausdorff | Source code |
| .hclust_helper | Source code |
| .hmap_dist | Source code |
| .is_identity_permutation | Source code |
| .lget_rank | Source code |
| .map_color | Source code |
| .map_color_01 | Source code |
| .nodots | Source code |
| .opt | Source code |
| .order_angle | Source code |
| .permute_1d | Source code |
| .permute_kd | Source code |
| .ppc | Source code |
| .print_control | Source code |
| .seriate_array_helper | Source code |
| .seriate_gruvaeus | Source code |
| .seriate_optimal | Source code |
| .stress | Source code |
| .valid_permutation_matrix | Source code |
| .valid_permutation_vector | Source code |
| Chameleon | Man page |
| DendSer | Man page |
| GA | Man page |
| Irish | Man page |
| LLE | Man page |
| LS | Man page |
| LS_insert | Man page Source code |
| LS_mixed | Man page Source code |
| LS_reverse | Man page Source code |
| LS_swap | Man page Source code |
| MDS_stress | Man page Source code |
| Munsingen | Man page |
| OPTICS | Man page |
| Psych24 | Man page |
| Robinson | Man page |
| SupremeCourt | Man page |
| Townships | Man page |
| VAT | Man page Source code |
| Wood | Man page |
| Zoo | Man page |
| [.ser_permutation | Man page |
| are.monotone | Source code |
| bertin_cut_line | Man page Source code |
| bertinplot | Man page Source code |
| bluered | Man page Source code |
| blues | Man page Source code |
| c.ser_permutation | Man page Source code |
| c.ser_permutation_vector | Man page Source code |
| chameleon | Man page |
| chameleon_ds4 | Man page |
| chameleon_ds5 | Man page |
| chameleon_ds7 | Man page |
| chameleon_ds8 | Man page |
| colors | Man page |
| concentrate | Source code |
| create_W | Source code |
| create_lines_data | Man page Source code |
| create_ordered_data | Man page Source code |
| criterion | Man page Source code |
| criterion.array | Man page Source code |
| criterion.data.frame | Man page |
| criterion.dist | Man page Source code |
| criterion.matrix | Man page Source code |
| criterion.table | Man page |
| criterion_2SUM | Source code |
| criterion_LS | Source code |
| criterion_ME | Source code |
| criterion_ME_dist | Source code |
| criterion_Moore_stress_dist | Source code |
| criterion_Neumann_stress_dist | Source code |
| criterion_R_dist | Source code |
| criterion_R_matrix | Source code |
| criterion_ar_deviations | Source code |
| criterion_ar_events | Source code |
| criterion_bar | Source code |
| criterion_gradient_raw | Source code |
| criterion_gradient_weighted | Source code |
| criterion_inertia | Source code |
| criterion_lazy_path_length | Source code |
| criterion_least_squares | Source code |
| criterion_path_length | Source code |
| criterion_rgar | Source code |
| criterion_stress_moore | Source code |
| criterion_stress_neumann | Source code |
| dendser | Man page |
| dissplot | Man page Source code |
| find_coords | Source code |
| find_nn_k | Source code |
| find_order | Source code |
| find_weights | Source code |
| ga | Man page |
| gaperm_mixedMutation | Man page Source code |
| get_config | Man page Source code |
| get_criterion_method | Man page Source code |
| get_default_criterion | Source code |
| get_default_method | Source code |
| get_method | Man page Source code |
| get_order | Man page Source code |
| get_order.default | Source code |
| get_order.dendrogram | Man page Source code |
| get_order.hclust | Man page Source code |
| get_order.integer | Man page Source code |
| get_order.numeric | Man page Source code |
| get_order.ser_permutation | Man page Source code |
| get_order.ser_permutation_vector | Man page Source code |
| get_permutation_matrix | Man page Source code |
| get_rank | Man page Source code |
| get_seriation_kind | Source code |
| get_seriation_method | Man page Source code |
| ggVAT | Man page Source code |
| ggbertinplot | Man page Source code |
| ggdissplot | Man page Source code |
| gghmap | Man page Source code |
| ggiVAT | Man page Source code |
| ggpimage | Man page Source code |
| ggpimage.dist | Man page Source code |
| ggpimage.matrix | Man page Source code |
| grays | Man page |
| greenred | Man page Source code |
| greens | Man page Source code |
| greys | Man page Source code |
| hmap | Man page Source code |
| iVAT | Man page Source code |
| is.robinson | Man page Source code |
| is.ser_permutation | Source code |
| is_correlation_matrix | Source code |
| length.ser_permutation_vector | Man page Source code |
| list_criterion_methods | Man page Source code |
| list_seriation_methods | Man page Source code |
| lle | Man page Source code |
| map | Source code |
| map_int | Source code |
| ndim | Source code |
| next.perm | Source code |
| optics | Man page |
| palette | Man page |
| panel.bars | Man page Source code |
| panel.blocks | Man page |
| panel.circles | Man page Source code |
| panel.lines | Man page Source code |
| panel.rectangles | Man page Source code |
| panel.squares | Man page |
| panel.tiles | Man page Source code |
| path_dist | Man page Source code |
| permutation_matrix2vector | Man page Source code |
| permutation_vector2matrix | Man page Source code |
| permute | Man page Source code |
| permute.array | Man page Source code |
| permute.character | Man page Source code |
| permute.data.frame | Man page Source code |
| permute.default | Source code |
| permute.dendrogram | Man page Source code |
| permute.dist | Man page Source code |
| permute.hclust | Man page Source code |
| permute.list | Man page Source code |
| permute.matrix | Man page Source code |
| permute.numeric | Man page Source code |
| permute.table | Man page Source code |
| pimage | Man page Source code |
| pimage.data.frame | Man page Source code |
| pimage.dist | Man page Source code |
| pimage.matrix | Man page Source code |
| pimage.table | Man page Source code |
| plot.reordered_cluster_dissimilarity_matrix | Man page Source code |
| plot_config | Man page |
| print.criterion_method | Man page Source code |
| print.reordered_cluster_dissimilarity_matrix | Man page Source code |
| print.ser_permutation | Man page Source code |
| print.ser_permutation_vector | Man page Source code |
| print.seriation_method | Man page Source code |
| random.robinson | Man page Source code |
| reds | Man page Source code |
| register_DendSer | Man page Source code |
| register_GA | Man page Source code |
| register_optics | Man page Source code |
| register_smacof | Man page Source code |
| register_tsne | Man page Source code |
| register_umap | Man page Source code |
| registersmacof | Man page |
| registry_criterion | Man page |
| registry_for_criterion_methods | Man page |
| registry_for_seriation_methods | Man page |
| registry_seriate | Man page |
| reorder | Man page |
| reorder.hclust | Man page Source code |
| rev.ser_permutation_vector | Man page Source code |
| robinson | Man page |
| ser_align | Man page Source code |
| ser_cor | Man page Source code |
| ser_dist | Man page Source code |
| ser_permutation | Man page Source code |
| ser_permutation_vector | Man page Source code |
| seriate | Man page Source code |
| seriate.array | Man page Source code |
| seriate.data.frame | Man page Source code |
| seriate.default | Source code |
| seriate.dist | Man page Source code |
| seriate.matrix | Man page Source code |
| seriate.table | Man page Source code |
| seriate_best | Man page Source code |
| seriate_bku | Source code |
| seriate_corr_matrix_AOE | Source code |
| seriate_dist_2SUM | Source code |
| seriate_dist_BAR | Source code |
| seriate_dist_Inertia | Source code |
| seriate_dist_LS | Source code |
| seriate_dist_SPIN | Source code |
| seriate_dist_SPIN_STS | Source code |
| seriate_dist_VAT | Source code |
| seriate_dist_angle | Source code |
| seriate_dist_arsa | Source code |
| seriate_dist_bburcg | Source code |
| seriate_dist_bbwrcg | Source code |
| seriate_dist_chen | Source code |
| seriate_dist_enumerate | Source code |
| seriate_dist_gw | Source code |
| seriate_dist_gw_average | Source code |
| seriate_dist_gw_complete | Source code |
| seriate_dist_gw_single | Source code |
| seriate_dist_gw_ward | Source code |
| seriate_dist_hc | Source code |
| seriate_dist_hc_average | Source code |
| seriate_dist_hc_complete | Source code |
| seriate_dist_hc_single | Source code |
| seriate_dist_hc_ward | Source code |
| seriate_dist_identity | Source code |
| seriate_dist_isomap | Source code |
| seriate_dist_mds | Source code |
| seriate_dist_mds_isoMDS | Source code |
| seriate_dist_mds_sammon | Source code |
| seriate_dist_metaMDS | Source code |
| seriate_dist_monoMDS | Source code |
| seriate_dist_olo | Source code |
| seriate_dist_olo_average | Source code |
| seriate_dist_olo_complete | Source code |
| seriate_dist_olo_single | Source code |
| seriate_dist_olo_ward | Source code |
| seriate_dist_random | Source code |
| seriate_dist_reverse | Source code |
| seriate_dist_spectral | Source code |
| seriate_dist_spectral_norm | Source code |
| seriate_dist_tsp | Source code |
| seriate_hc_mean | Source code |
| seriate_improve | Man page Source code |
| seriate_lle | Source code |
| seriate_matrix_angle | Source code |
| seriate_matrix_bea | Source code |
| seriate_matrix_bea_tsp | Source code |
| seriate_matrix_ca | Source code |
| seriate_matrix_fpc | Source code |
| seriate_matrix_heatmap | Source code |
| seriate_matrix_identity | Source code |
| seriate_matrix_mean | Source code |
| seriate_matrix_random | Source code |
| seriate_matrix_reverse | Source code |
| seriate_rep | Man page Source code |
| seriate_sa | Source code |
| seriate_sgd | Source code |
| seriation | Man page |
| seriation-package | Man page |
| set_criterion_method | Man page Source code |
| set_seriation_method | Man page Source code |
| smacof | Man page |
| summary.ser_permutation | Man page Source code |
| summary.ser_permutation_vector | Man page Source code |
| tSNE | Man page |
| table2matrix | Source code |
| tsne | Man page |
| umap | Man page |
| uniscale | Man page Source code |
