autoplot.pop_data: Plot distribution of antibodies

In serocalculator: Estimating Infection Rates from Serological Data

Plot distribution of antibodies

Description

autoplot() method for pop_data objects

Usage

## S3 method for class 'pop_data'
autoplot(object, log = FALSE, type = "density", strata = NULL, ...)

Arguments

object	A pop_data object (from load_pop_data())
log	whether to show antibody responses on logarithmic scale
type	an option to choose type of chart: the current options are "density" or "age-scatter"
strata	the name of a variable in pop_data to stratify by (or NULL for no stratification)
...	unused

Value

a ggplot2::ggplot object

Examples

library(dplyr)
library(ggplot2)
library(magrittr)

xs_data <-
  serocalculator_example("example_pop_data.csv") %>%
  read.csv() %>%
  as_pop_data()

xs_data %>% autoplot(strata = "catchment", type = "density")
xs_data %>% autoplot(strata = "catchment", type = "age-scatter")

serocalculator documentation built on April 3, 2025, 7:35 p.m.