View source: R/summary.Binomial.SGoF.R
summary.Binomial.SGoF | R Documentation |
Summary of the most important results given by the Binomial SGoF procedure.
## S3 method for class 'Binomial.SGoF'
summary(object, ...)
object |
A Binomial.SGoF object. |
... |
Additional arguments affecting the summary produced. |
Rejections |
The number of effects declared by the Binomial SGoF procedure . |
FDR |
The estimated false discovery rate. |
Adjusted.pvalues |
Table of adjusted p-values falling under gamma. |
Irene Castro Conde and Jacobo de Uña Álvarez
Carvajal Rodríguez A, de Uña Álvarez J and Rolán Álvarez E (2009). A new multitest correction (Binomial.SGoF) that increases its statistical power when increasing the number of tests. BMC Bioinformatics 10:209.
Castro Conde I and de Uña Álvarez J (2015). Adjusted p-values for SGoF multiple test procedure. Biometrical Journal; 57(1): 108-122. DOI: 10.1002/bimj.201300238
Dalmasso C, Broet P and Moreau T (2005) A simple procedure for estimating the false discovery rate. Bioinformatics 21:660–668
Binomial.SGoF
,plot.Binomial.SGoF
p<-runif(387)^2 #387 independent p-values, non-uniform intersection null violated
res<-Binomial.SGoF(p)
summary(res) #number of rejected nulls, estimated FDR
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