summary.SGoF: Summary of a SGoF object

In sgof: Multiple Hypothesis Testing

Summary of a SGoF object

Description

Summary of the most important results given by the Conservative SGoF procedure.

Usage

## S3 method for class 'SGoF'
summary(object, ...)

Arguments

object	A SGoF object.
...	Additional arguments affecting the summary produced.

Value

Rejections	The number of effects declared by SGoF.
FDR	The estimated false discovery rate.
Adjusted.pvalues	Table of adjusted p-values falling under gamma.

Author(s)

Irene Castro Conde and Jacobo de Uña Álvarez

References

Castro Conde I and de Uña Álvarez J (2015). Adjusted p-values for SGoF multiple test procedure. Biometrical Journal; 57(1): 108-122. DOI: 10.1002/bimj.201300238

Dalmasso C, Broet P and Moreau T (2005) A simple procedure for estimating the false discovery rate. Bioinformatics 21:660–668

de Uña Álvarez J (2011). On the statistical properties of SGoF multitesting method. Statistical Applications in Genetics and Molecular Biology, Vol. 10, Iss. 1, Article 18.

See Also

SGoF,plot.SGoF

Examples

p<-runif(387)^2  #387 independent p-values, non-uniform intersection null violated

res<-SGoF(p)
summary(res)   #number of rejected nulls, estimated FDR

sgof documentation built on Sept. 8, 2023, 5:34 p.m.