Oyster_Shell_thickness: Formula that calculates average shell thickness through time

In shelltrace: Bivalve Growth and Trace Element Accumulation Model

Description

Formula that calculates average shell thickness at the moment of deposition of each shell increment from X- and Y-coordinates of the shell increments and adds the result to the matrix of increment characteristics. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>

Usage

Oyster_Shell_thickness(cross_section, incr_matrix)

Arguments

incr_matrix	Matrix listing characteristics of each digitized increment
cross_section	Digitized cross section of the shell with shell top, bottom and growth increments relative to a common X-axis

Details

Shell thickness is calculated as the average difference in Y-values between the shell increment and the top of the shell (Increment 0)

Value

incr_matrix

Updated matrix listing characteristics of each digitized increment, shell thickness values are added

A plot of the change in shell thickness with shell age based on the digitized growth increments is produced in a new window

Note

Please cite Geoscientific Model Development paper dealing with the ShellTrace model

Author(s)

Niels J. de Winter

Source

GitHub
Manuscript
Supplementary data
Author website

References

de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.

Examples

  incr_matrix2<-Oyster_Shell_thickness(cross_section, incr_matrix1)

shelltrace documentation built on May 2, 2019, 2:25 a.m.