Description Usage Arguments Details Value Note Author(s) Source References Examples
View source: R/Oyster_run_sec4.R
Function that combines all functions in Step 4 of the bivalve growth model and runs them consecutively given the right input. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>
1 | Oyster_run_sec4(IncG, subincr_matrix, Xstep = 0.1)
|
IncG |
Matrix of X- and Y-coordinates of all interpolated sub-increments |
subincr_matrix |
Revised version of the "yearly_matrix" data frame that contains characteristics calculated for every sub-increment |
Xstep |
The step size (dx) in X-direction used to interpolate coordinates of shell increments |
This function runs the functions Oyster_Z_matrices and Oyster_Volumes consecutively
A list of two items:
subincr_matrix |
Revised version of the "incr_matrix" data frame that contains characteristics calculated for every sub-increment |
IncGAnet |
Matrix of areas of cross sections in YZ-directions sorted by X-values and by sub-increment |
Please cite Geoscientific Model Development paper dealing with the ShellTrace model
Niels J. de Winter
GitHub
Manuscript
Supplementary data
Author website
de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.
1 2 3 4 | ## Not run:
List4<-Oyster_run_sec4(IncG, subincr_matrix4, Xstep = 1)
## End(Not run)
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