get_sig_cancer_type_index: Obtain Signature Index for Cancer Types

In sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations

Obtain Signature Index for Cancer Types

Description

Obtain Signature Index for Cancer Types

Usage

get_sig_cancer_type_index(
  sig_type = c("legacy", "SBS", "DBS", "ID"),
  seq_type = c("WGS", "WES"),
  source = c("PCAWG", "TCGA", "nonPCAWG"),
  keyword = NULL
)

Arguments

sig_type	signature type.
seq_type	sequencing type.
source	data source.
keyword	keyword to search in the signature index database.

Value

a list.

Examples

l1 <- get_sig_cancer_type_index()
l2 <- get_sig_cancer_type_index(sig_type = "SBS")
l3 <- get_sig_cancer_type_index(sig_type = "DBS", source = "PCAWG", seq_type = "WGS")
l4 <- get_sig_cancer_type_index(sig_type = "ID")
l5 <- get_sig_cancer_type_index(keyword = "breast")
l1
l2
l3
l4
l5

sigminer documentation built on May 29, 2024, 3:11 a.m.