handle_hyper_mutation: Handle Hypermutant Samples
In sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations
View source: R/handle_hyper_mutation.R
handle_hyper_mutation R Documentation
Handle Hypermutant Samples
Description
This can be used for SNV/INDEL count matrix. For copy number analysis,
please skip it.
Usage
handle_hyper_mutation(nmf_matrix)
Arguments
nmf_matrix
a matrix used for NMF decomposition with rows indicate samples and columns indicate components.
Value
a matrix.
References
Kim, Jaegil, et al. "Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors."
Nature genetics 48.6 (2016): 600.
sigminer documentation built on May 29, 2024, 3:11 a.m.
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View source: R/handle_hyper_mutation.R
| handle_hyper_mutation | R Documentation |
Handle Hypermutant Samples
Description
This can be used for SNV/INDEL count matrix. For copy number analysis, please skip it.
Usage
handle_hyper_mutation(nmf_matrix)
Arguments
nmf_matrix |
a |
Value
a matrix.
References
Kim, Jaegil, et al. "Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors." Nature genetics 48.6 (2016): 600.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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