group_enrichment2: Group Enrichment Analysis with Subsets

In sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations

Group Enrichment Analysis with Subsets

Description

More details see group_enrichment().

Usage

group_enrichment2(
  df,
  subset_var,
  grp_vars,
  enrich_vars,
  co_method = c("t.test", "wilcox.test"),
  ref_group = NA
)

Arguments

df	a data.frame.
subset_var	a column for subsetting.
grp_vars	character vector specifying group variables to split samples into subgroups (at least 2 subgroups, otherwise this variable will be skipped).
enrich_vars	character vector specifying measure variables to be compared. If variable is not numeric, only binary cases are accepted in the form of TRUE/FALSE or P/N (P for positive cases and N for negative cases). Of note, NA values set to negative cases.
co_method	test method for continuous variable, default is 't.test'.
ref_group	reference group set in grp_vars.

See Also

show_group_enrichment

sigminer documentation built on May 29, 2024, 3:11 a.m.